Protein Info for ABID97_RS23510 in Variovorax sp. OAS795

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1209 transmembrane" amino acids 58 to 81 (24 residues), see Phobius details amino acids 88 to 110 (23 residues), see Phobius details amino acids 125 to 153 (29 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details amino acids 196 to 220 (25 residues), see Phobius details amino acids 234 to 252 (19 residues), see Phobius details amino acids 272 to 301 (30 residues), see Phobius details amino acids 326 to 346 (21 residues), see Phobius details amino acids 374 to 393 (20 residues), see Phobius details amino acids 399 to 420 (22 residues), see Phobius details amino acids 441 to 463 (23 residues), see Phobius details amino acids 470 to 490 (21 residues), see Phobius details amino acids 611 to 633 (23 residues), see Phobius details amino acids 670 to 689 (20 residues), see Phobius details PF00512: HisKA" amino acids 756 to 822 (67 residues), 55.7 bits, see alignment 6.2e-19 PF02518: HATPase_c" amino acids 870 to 977 (108 residues), 93.3 bits, see alignment E=2e-30 PF00072: Response_reg" amino acids 1008 to 1116 (109 residues), 48.9 bits, see alignment E=1e-16

Best Hits

Predicted SEED Role

"Two-component hybrid sensor and regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1209 amino acids)

>ABID97_RS23510 ATP-binding protein (Variovorax sp. OAS795)
MHRNGVNPAETPPTTDDAPQRIVKVRRDYNSWVASETLEDYALRYTPQRFRKWSEWRVAN
TAFGAASFLILEAVGATLLVQYGFANAFWAIVATGLIIFLAGLPISVYAARYGVDMDLLT
RGAGFGYIGSTLTSLIYASFTFIFFALEAAVMAYALELALGVPPVWGYLVCALVVIPLVT
HGVSAISRLQLWTQPLWLVMLVVPFVFVLVRDPGAFAGIVHYNGSKASTKGFDLHLFGAA
LTVGIALITQMGEQADYLRFMPARTAGSARRWWAGVLAGGPGWVLLGVLKMLGGALLAYL
AITHMVPVERAVDPNQMYLAAYEYVFPNYGWAVAATALFVVISQLKINVTNAYAGSLAWS
NFFSRVAHSHPGRVVWVVFNALIAFMLMEMNVFEALGDVLGLFANIAIAWMMAVVADLVI
NKPLGLSPPGIEFKRAHLWDINPVGVGAMALASLLSITAHLGLFGPLAQAFSALIALGTA
LVVSPLLAWATGGKYYLARGTAAHGAVAFAPAAGGRAVRWARVENDADGRGAEGSYQRLK
VQHCVICEREYEGPDMAHCPAYQGAICSLCCTLDARCGDLCKPHASLSAQWSSVLRWLLP
RFSWRYLDTGLGHFLLLMLIIVPVLAVVFGVLYQQELRAMADSVLQMASQSELAEALANA
QQSALRSGFLKAYMALLVIAGVVAWWLVLAHQSRRVAQEESNRQTHLLMREIELHRATDR
ALQSAKQTAEEAREVAEQAKLAADLARRAADQANQAKSRYISAISHELRTPLNSILGYAQ
LMGEDHSVPPHRQQAVAVIKRGGEHLLSLIEGTLAIAHIEAGKLTLHARPMRFADTLREL
ADMFELQAAEKGLRFRFETTGSLPEVVRADEKRVCQILINLLGNAIKFTGAGEVTLRLSY
AREFASVEIEDTGPGMTAADIERIFEPFARGHSAAASTPGAGLGLTIAKMLTDLMGGEMK
VRSTPGEGSLFCVRLFLPRVHDAAVAAGRPVPMQRPRRGYEGPRRRLLVVDNEEADRDLL
GHVLAPLGFELRTAASGHDALDLIAAGYRPDAVFVDLAMPGIDGWETIRRARKLGLADAS
VAIVSANAFDKGLDNDAGIAPEDFFVKPVRHTELLDWLERRLGLRWTDTAAKPAPAALPR
AMLAPAVSRLRALDEAVSLGYFRGIMNQLDEIDAEQPECAAWTEAQRVLARQFQFEAMGR
ALAAAVSAA