Protein Info for ABID97_RS23325 in Variovorax sp. OAS795

Annotation: cytochrome c biogenesis protein ResB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 722 transmembrane" amino acids 26 to 47 (22 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 181 to 199 (19 residues), see Phobius details amino acids 646 to 664 (19 residues), see Phobius details PF05140: ResB" amino acids 27 to 705 (679 residues), 445.1 bits, see alignment E=1.8e-137

Best Hits

KEGG orthology group: K07399, cytochrome c biogenesis protein (inferred from 97% identity to vap:Vapar_1132)

Predicted SEED Role

"Cytochrome c-type biogenesis protein Ccs1/ResB" in subsystem Biogenesis of c-type cytochromes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (722 amino acids)

>ABID97_RS23325 cytochrome c biogenesis protein ResB (Variovorax sp. OAS795)
MSVSTHGLRVHRGPQALRAGVELFSSMRFAIALLTIICIASIIGTVLKQHESINNYVNQF
GPFWAELFRAAKLDSVYSAWWFLLILLFLVISTSLCIARNTPRIFVDLKTFKEGIRAQSL
KAFGQRAETRLHEAPAAAANRIGQLLVSGGWKVKLQQREAANGHAEAGWMVAARAGGAHK
LGYIAAHSAIVLVCIGGLLDGDLVVRAQTWFNGKSVFTGGGMIADVPAQHRLSPRNPTFR
GNILVPEGAQGSVAILQQSDGVLLQELPFSIELKKFIVDYYSTGMPKLFASEVVLHDRET
GAQVPARIEVNHPASYKGVEIYQSSFDDGGSKVKLKAVPMAAAAKPFDVEGVIGGPSTEI
TNGKEKLTLEYAALRVINVENFADGGAMGSGADVRKVDLRHDIESRLGAANKTSKPKVLR
NIGPSIGYKLRDAAGQAREYQNYMVPVDTGDGQPVFLLGMREKPEEPFRYLRVPADDQGS
MDSFVRMRTALADADTRNRAVERYIAKAVDPKRPEMAEQLRVSAARALALFAGSERAKAD
AATKGGWQAIAEFMEANVPEAERERAGAVLVRILNDVLFEVLNLSREGAGLAALPSDQAS
QAFLTQAVLAISDAYFYPAPVAMMMTDFTQVQASVFQVARAPGKNVVYLGCLLLIIGIFA
MLYVRERRLWVWLAPGGASAGDNTTAATMAFSVNRKTMDSDREFEHLKHKLLALQKEGQA
TP