Protein Info for ABID97_RS23225 in Variovorax sp. OAS795
Annotation: glutamate synthase-related protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00265, glutamate synthase (NADPH/NADH) large chain [EC: 1.4.1.13 1.4.1.14] (inferred from 88% identity to aaa:Acav_0979)Predicted SEED Role
"Glutamate synthase [NADPH] large chain (EC 1.4.1.13)" in subsystem Ammonia assimilation or Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis (EC 1.4.1.13)
MetaCyc Pathways
- L-glutamate and L-glutamine biosynthesis (7/7 steps found)
- L-asparagine biosynthesis III (tRNA-dependent) (4/4 steps found)
- ammonia assimilation cycle III (3/3 steps found)
- superpathway of ammonia assimilation (plants) (3/3 steps found)
- L-glutamate biosynthesis I (2/2 steps found)
- ammonia assimilation cycle I (2/2 steps found)
- L-glutamate biosynthesis IV (1/1 steps found)
- L-glutamine degradation I (1/1 steps found)
- L-glutamine degradation II (1/1 steps found)
- L-citrulline biosynthesis (6/8 steps found)
- glutaminyl-tRNAgln biosynthesis via transamidation (3/4 steps found)
- superpathway of L-citrulline metabolism (8/12 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Glutamate metabolism
- Nitrogen metabolism
Isozymes
Compare fitness of predicted isozymes for: 1.4.1.13, 1.4.1.14
Use Curated BLAST to search for 1.4.1.13 or 1.4.1.14
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1587 amino acids)
>ABID97_RS23225 glutamate synthase-related protein (Variovorax sp. OAS795) MTTAAEIEHLQQHGLYSGADEHDACGVGFVAHIKGEKSHAIVLQGLKILENLDHRGAVGA DKLMGDGAGILIQLPDHLYREEMAKQGVTLPPPGEYGVGMIFLPKEHASREACEQEMERA IKAEGQVLLGWRDVPVNRDMPMSPTVRAKEPLLRQVFIGRGNDVIVQDALERKLYVIRKT ASANIQRLKLKHSKEYYVPSMSSRTVVYKGLLLADQVGTYYLDLQDKRCISALGLVHQRF STNTFPEWPLAHPYRYVAHNGEINTVKGNYNWMKAREGVMSSPVLGADLQKLYPISFAGQ SDTATFDNCLELLTMAGYPISQAVMMMIPEPWEQHATMDPRRRAFYEYHAAMLEPWDGPA SIVFTDGRQIGATLDRNGLRPSRYCVTDDDLVIMASESGVLPVPEQKIVRKWRLQPGKMF LIDLEQGRMIDDEEVKATLANSKPYKQWIENLRIKLDSVNAEPAATAIKAPVSQVALLDR QQAFGYTQEDIKFLMSPMAQAGEEGIGSMGNDSPLAVLSNKNKPLYNYFKQLFAQVTNPP IDPIREAIVMSLVSFIGPKPNLLDINQVNPPMRLEVSQPILDFADMAKLRDIGTYTQGKF KSYVLDITYPLAWGDEGVEAKLASLCAEAVDAIKGGHNILIVSDRGVSPTQVAIPAVLAL SAVHQYLVREGLRTTAGLVVETGSAREVHHFGVLAGYGAEAVHPYLAMETLAAMHADLPG DMSAEKAVYNYVKAIGKGLSKIMSKMGVSTYMSYCGAQLFEAIGLNTETVNKYFTGTASR VEGIGVFEIAEEAIRMHKAAFGDDPILSNMLDAGGEYAWRTRGEEHMWTPDAIAKLQHST RSNNWNTYKEYAQLINDQNRRHLTLRGLFEFKLDPAKAIPVDEVEPAAEIVKRFATGAMS LGSISTEAHSTLAIAMNRIGGKSNTGEGGEDPARYRNELKGIPIKKGDTLKSVIGAANVE VDLPLQDGDSLRSRIKQVASGRFGVTAEYLFSADQIQIKMAQGAKPGEGGQLPGGKVTEY IGKQRYAVPGVGLISPPPHHDIYSIEDLAQLIHDLKNAAPHASISVKLVSEIGVGTIAAG VAKCKSDHVVIAGHDGGTGASPWSSIKHAGSPWEIGLAETQQTLVLNRLRSRIRVQADGQ MKTGRDVAIGALLGADEFGFATAPLVVEGCIMMRKCHLNTCPVGVATQDPILRKKFSGKP EHVVNYFFFVAEEVRQIMAQLGIRKFDDLIGRADLLDMRKGIEHWKASGLDFSRLFALPI VPADVPRYHVENQDHGLERALDVKLIEKSRPAIERGEKVQFIEVARNVNRSVGAMLSGAL TKVHPQGLPDDSIRIQLEGTGGQSFGAFLARGITLYLIGDANDYTGKGLSGGRVVVRPSL DFRGEAVRNTIVGNTALYGATTGEAYLCGVAGERFAVRLSGATAVVEGTGDHGCEYMTGG TVAVLGKTGRNFAAGMSGGVAFVYDEDGQFASRCNLSMVSLDKVLTSAEQTASMHRKIWH GGDTDEAQLKKLLEEHHRWTGSKRARELLDNWAEARTKFVKVFPNEYKRALAELHDRKVE LTSSGNNAHIGLEPHALAAQQATPAAA