Protein Info for ABID97_RS23070 in Variovorax sp. OAS795

Annotation: twin-arginine translocase subunit TatC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 transmembrane" amino acids 33 to 52 (20 residues), see Phobius details amino acids 78 to 109 (32 residues), see Phobius details amino acids 122 to 144 (23 residues), see Phobius details amino acids 173 to 194 (22 residues), see Phobius details amino acids 206 to 224 (19 residues), see Phobius details amino acids 231 to 251 (21 residues), see Phobius details TIGR00945: twin arginine-targeting protein translocase TatC" amino acids 23 to 241 (219 residues), 187.5 bits, see alignment E=1.6e-59 PF00902: TatC" amino acids 24 to 236 (213 residues), 198.7 bits, see alignment E=5.3e-63

Best Hits

KEGG orthology group: K03118, sec-independent protein translocase protein TatC (inferred from 96% identity to vpe:Varpa_1270)

Predicted SEED Role

"Twin-arginine translocation protein TatC" in subsystem Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related or Twin-arginine translocation system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>ABID97_RS23070 twin-arginine translocase subunit TatC (Variovorax sp. OAS795)
MADSDNKNKDAEDELAGTEQPFVQHLVELRDRLLYCVYGLVIAGVLLAIWPGPGGLIDLI
AMPIRAHMPADAKLIAIGVFSPFFVPLKVLMMTAVLLALPWLMYQAWMFVAPGLYSHEKR
FALPLIFFGSLLAYAGIAFVQFFVLDKMFSFIQKFTPAAVAATPDISSYVEAILSLYIAF
GVAFQVPIVVMLLVRFEMVTIEKLKSFRGYFIVVAFVVAAVLTPPDVVSQLALAIPMCLL
YEVGIIGARYFAQGSKKPEEEGADSSASS