Protein Info for ABID97_RS22820 in Variovorax sp. OAS795

Annotation: branched-chain amino acid ABC transporter ATP-binding protein/permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 634 transmembrane" amino acids 23 to 40 (18 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details amino acids 77 to 100 (24 residues), see Phobius details amino acids 107 to 130 (24 residues), see Phobius details amino acids 137 to 154 (18 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 234 to 252 (19 residues), see Phobius details amino acids 272 to 295 (24 residues), see Phobius details amino acids 307 to 327 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 45 to 327 (283 residues), 110.1 bits, see alignment E=2.2e-35 PF00005: ABC_tran" amino acids 395 to 553 (159 residues), 106 bits, see alignment E=5.1e-34 PF12399: BCA_ABC_TP_C" amino acids 602 to 626 (25 residues), 49.2 bits, see alignment (E = 6e-17)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein K01998, branched-chain amino acid transport system permease protein (inferred from 91% identity to vap:Vapar_1228)

Predicted SEED Role

"ABC-type branched-chain amino acid transport systems, ATPase component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (634 amino acids)

>ABID97_RS22820 branched-chain amino acid ABC transporter ATP-binding protein/permease (Variovorax sp. OAS795)
MSAPSNPIEASALPSGKPLATPRQLTLVLVVLLALSWGFLPEFTVSVLSNIGLYALVAAG
LVMLTGVGGMTSFGQAAFVGVGSYATAWICTSPAATAWLGGLFGPALLPWAGLLLGLLLT
FALAWALGAVTLKLQGHYLPLCTIAWGLSLYYLFGNMDFLGGQTGITGVPPIVIAGFSLA
TPRALGVVIWTVLLLALWALHNLLDSREGRAIRALKGGRLMAESMGVDTARHRVKLFVLA
ALMAAVSGWLYAHLQRFVNPTPFNLNIGIELLFMAVVGGAGHLWGAVLGAALITLLKEKL
QDVLPSLLGSSGNFEVIVFGLLMLFVLQRFAEGLWPTLARIAARWVRPHAAADDGTARPA
ASTVRLAHRELPAKGEVLLQATRVSKRFGGLVANNEISMTLKAGEIHALIGPNGAGKSTF
FNMISGVDDPSAGEVRLADQAMTGKPSRVFAALGLGRTFQHVRLLGQRSVAENVALGAHL
RARRGWLAAMLRLDRGEEAALMAEARRQIERCGLGAQADTPAASLSLGQQRVVEIARALA
GQPSVLLLDEPAAGLRHLEKRALSVLLGQLRAEGLGILVVEHDMEFVMNLADRITVLEFG
TVIATGTPAEVQANPRVLEAYLGGADDELLEETR