Protein Info for ABID97_RS22695 in Variovorax sp. OAS795

Annotation: tripartite tricarboxylate transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 transmembrane" amino acids 12 to 39 (28 residues), see Phobius details amino acids 45 to 70 (26 residues), see Phobius details amino acids 109 to 132 (24 residues), see Phobius details amino acids 147 to 190 (44 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details amino acids 256 to 281 (26 residues), see Phobius details amino acids 318 to 342 (25 residues), see Phobius details amino acids 357 to 382 (26 residues), see Phobius details amino acids 389 to 409 (21 residues), see Phobius details amino acids 416 to 446 (31 residues), see Phobius details amino acids 466 to 491 (26 residues), see Phobius details PF01970: TctA" amino acids 20 to 441 (422 residues), 529.4 bits, see alignment E=2.8e-163

Best Hits

Swiss-Prot: 62% identical to YZ2R_AGRVI: Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'region from Agrobacterium vitis

KEGG orthology group: None (inferred from 97% identity to vap:Vapar_1251)

Predicted SEED Role

"Tricarboxylate transport membrane protein TctA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (504 amino acids)

>ABID97_RS22695 tripartite tricarboxylate transporter permease (Variovorax sp. OAS795)
MELFEHLSMGFGVAFTFTNLLYCLAGCILGTLIGVLPGIGPVATIAMLLPATYALPPVSA
LIMLAGIYYGAQYGGSTTAILVNLPGESSSVVTVIDGYQMARKGRAGPALAAAGLGSFFA
GCVGTLILAAFAPPLTELAFKFGPAEYFSLMILGLIGAVVLASGSLLKAIGMIVLGLLMG
LVGTDVNSGVARYSFDIPELTDGIGFVAIAMGVFGYGEIIANLSRPDDEREVFTAKVSGL
FPTKEDFKRMVPAVLRGTALGSALGILPGGGALLAAFAAYTIEKKTKLHPGEVPFGKGNI
RGVAAPESANNAGAQTSFIPLLTLGIPPNAVMALMVGAMTIHNIQPGPQVMTSNPELFWG
LIASMWLGNAMLIILNLPLIGMWIKLLSVPYKFLFPAIVLFCAIGVYSTNNNTFDIWMVG
IFGLVGYSFFKLGCEPAPLLLGFILGPMMEENLRRSLLLSRGDWSVFVTRPISASLLAAA
ALLLVIVLLPAVKSKREEAFVEVD