Protein Info for ABID97_RS22085 in Variovorax sp. OAS795

Annotation: DUF1800 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 PF08811: DUF1800" amino acids 7 to 454 (448 residues), 395.1 bits, see alignment E=2.4e-122

Best Hits

KEGG orthology group: None (inferred from 68% identity to del:DelCs14_2645)

Predicted SEED Role

"Uncharacterized protein conserved in bacteria"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (455 amino acids)

>ABID97_RS22085 DUF1800 domain-containing protein (Variovorax sp. OAS795)
MSAPAIALNRFGLGARPDEPAPADPQRWLLSQLDRFEALPAPWQSAAHTPALVEAWLAQQ
RAVRQAPEGQRAGIREAYLRQGRDDYVAAVAARTHSALQASAPFVERLVHFWSNHFAVSV
DKLLVVGLAGGFEADAIRPNVLGRFEDLLLAAVRHPAMLLYLDQAQSVGPGSPAAQRAQE
RQARVRGLNENLAREILELHTLGVRSGYTQDDVTEFARALTGLTLPADEPDKGNEAPFRF
VRALHEPGARTVLGRSYAEGGEEQALAIIHDLATALATARHVATKLARHFVADDPPPALV
QRLADTFSRTGGDLPRVYRELVASPEAWQPVPAKFKSPWDWGISSLRAAGRRELPPRQST
TLMNQLGQPVWRPGSPAGYGDLAGTWAAPDALIRRVEAAQRFAEQAGDAVDARALAPRVL
PGGALGAATADAIARADSGSTALALLLVSPEFLRR