Protein Info for ABID97_RS21235 in Variovorax sp. OAS795

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 41 to 61 (21 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 139 to 160 (22 residues), see Phobius details amino acids 168 to 189 (22 residues), see Phobius details amino acids 226 to 247 (22 residues), see Phobius details amino acids 260 to 281 (22 residues), see Phobius details amino acids 289 to 307 (19 residues), see Phobius details amino acids 313 to 336 (24 residues), see Phobius details amino acids 346 to 367 (22 residues), see Phobius details amino acids 379 to 398 (20 residues), see Phobius details PF07690: MFS_1" amino acids 21 to 247 (227 residues), 61.8 bits, see alignment E=2.8e-21 amino acids 227 to 406 (180 residues), 50.1 bits, see alignment E=1e-17

Best Hits

KEGG orthology group: None (inferred from 88% identity to pol:Bpro_3544)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>ABID97_RS21235 MFS transporter (Variovorax sp. OAS795)
MNETTLRRHALWFVLLAAAGAFALTMGVRQTMGLFLSALNTSTALGIGSISLAFAFGQLW
WGLTQPFAGAVADRIGTGRVVFLGVLLVAVGTLITPLMTSTAGLIFAIGVVAAGGAGMAG
PSVLMAATTRLVPAHKRGFATGVVNAGGSFGQFAMAPIAVGLTAAVGWAGAMQWLGVLVL
LALPAAWVLKGNSKAMAAASAAASGTRPLSAREAIGQALATPSYRYLSLGFLVCGFHVAF
LATHLPGVVAACGLPPEVGGWALGMVGLFNIVGSLAMGWAVGRWRMKSLLSLLYATRAIA
VLVFLLAPKTTVVMLVFAAVMGVTFLSTVPPTAGLVAKMFGPANMAMLFGIVMLAHQVGG
FLGAFLGGYVFQATGNYDIVWYIDIALAAGAALVHLPIREARLARSKLAAA