Protein Info for ABID97_RS21180 in Variovorax sp. OAS795

Annotation: sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 355 PF00005: ABC_tran" amino acids 20 to 161 (142 residues), 117.4 bits, see alignment E=1.6e-37 PF17912: OB_MalK" amino acids 235 to 285 (51 residues), 42.1 bits, see alignment 2.6e-14 PF08402: TOBE_2" amino acids 279 to 346 (68 residues), 31.6 bits, see alignment E=2.9e-11

Best Hits

Swiss-Prot: 61% identical to UGPC_BURL3: sn-glycerol-3-phosphate import ATP-binding protein UgpC (ugpC) from Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)

KEGG orthology group: K02023, multiple sugar transport system ATP-binding protein (inferred from 98% identity to vap:Vapar_3684)

Predicted SEED Role

"Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19)" in subsystem Maltose and Maltodextrin Utilization (EC 3.6.3.19)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.19

Use Curated BLAST to search for 3.6.3.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (355 amino acids)

>ABID97_RS21180 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC (Variovorax sp. OAS795)
MASVSFRNIQKSFGKVQIIQGLSFDITDGEFVVLVGPSGCGKSTLLRMLAGLEDISGGEI
MIDSRVVNDLESKDRDIAMVFQSYALYPHMTVGENMGFSLRLRNAEKSVTDERVSRAAKI
LNLDALLGRYPRELSGGQRQRVAMGRAIVRDPKVFLFDEPLSNLDAKLRVAMRAEIKALH
QRLKTTTVYVTHDQIEAMTMADRIVVMHDGIVEQIGTPLDLYDRPDNLFVAQFIGSPSMN
VIEGTVRRSGADCHVEAHGARWPVPPGTSAPDGQPVHYGIRPGDITLGGGSGVNAQVIVV
EPTGAETELLVQVGEAKLVLAVHGRVDALPDQTVGLAIDADRVHLFDRQTGRRMP