Protein Info for ABID97_RS20855 in Variovorax sp. OAS795

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1035 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 343 to 363 (21 residues), see Phobius details amino acids 369 to 390 (22 residues), see Phobius details amino acids 396 to 420 (25 residues), see Phobius details amino acids 439 to 460 (22 residues), see Phobius details amino acids 472 to 493 (22 residues), see Phobius details amino acids 536 to 556 (21 residues), see Phobius details amino acids 864 to 882 (19 residues), see Phobius details amino acids 899 to 928 (30 residues), see Phobius details amino acids 964 to 983 (20 residues), see Phobius details amino acids 995 to 1019 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 6 to 1019 (1014 residues), 1003.6 bits, see alignment E=1e-305 PF02355: SecD_SecF_C" amino acids 347 to 488 (142 residues), 23.1 bits, see alignment E=4.3e-09

Best Hits

KEGG orthology group: K07788, RND superfamily, multidrug transport protein MdtB (inferred from 61% identity to axy:AXYL_00555)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1035 amino acids)

>ABID97_RS20855 efflux RND transporter permease subunit (Variovorax sp. OAS795)
MSPSRPFIERPVATALLMVAIVLAGLVGLRLLPLAALPQVDYPTIQVQTLYPGASPEVMG
RTVTAPLERQFGQMAGLNRMSSVSSAGASIITLQFALDQTLDVAEQQVQAAINAGGSLLP
ADLPAPPVYAKVNPADAPILTLAVSSETMPLTEVQNLVNTRLAQKISQVGGVGLVSLSGG
QRPAVRIQADTNALASVGIGLDTLRSAITAANANSAKGSFDGPRRAYTINANDQLVTADD
YKNLIVAWKNGAPVRMTDVARVVDGAENTQLGAWAALRAGEQPATLYPAIILNVQRQPGA
NVIGTVDAIKKQLPELEAALPGSLKVEVLSDRTTGIRASVSHVQLELGLAVVMVVLVIFF
FLHSVRATVIASLAVPISLIGTCGLMYLLGYSLNNLSLMALTIATGFVVDDAIVMIENIA
RYLEEGDPPFKAALKGATQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFREFAVTLAITI
LISAVVSLTLVPMMSARWLKPQAEEGGRFGASVQRFFDRVIGRYDLWLQWVLRHQPLTLV
VAVATLGLTVLLYVVIPKGLFPTQDTGQLQARIEAAQDVSYTRMAELQQQAANAILADPE
VASVSSVVGVDAANNTALNTGSMLINMRAGRGDQEATMQRLRERVRAVAGVTLYLQPTQD
LTIDAETGPTEFRVSLEGVDTNTVDTWAQKLVERLRSEPLVRNATTNAGAKGLAAYVDID
RNTASRLSVTASSVDDTLYSAFGQRIVSTIFTETNQYRVILEAQREALASPQMLGNLQLR
TGSGGATTLSSFATVREQAAPLQVTHVAQYPAATVGFDTAENVALGKSVAAIRAAAKEIG
MPSSMTMTFLGAAGAYEKSLSNQLWLILAAVVCVYIVLGVLYESYIHPLTILSTLPSAGV
GALLALMVTGNDLGVIGIIGIILLIGIVKKNAIMMIDFAIDAERREGKSPHEAIHQAALL
RFRPILMTTLAALFAALPLMFGWGEGAELRRPLGLAIFGGLVVSQVLTLFTTPVVYLAFD
RLGRRFGRRREAVAE