Protein Info for ABID97_RS20750 in Variovorax sp. OAS795

Annotation: DUF418 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 102 to 135 (34 residues), see Phobius details amino acids 141 to 161 (21 residues), see Phobius details amino acids 207 to 227 (21 residues), see Phobius details amino acids 247 to 267 (21 residues), see Phobius details amino acids 279 to 301 (23 residues), see Phobius details amino acids 321 to 342 (22 residues), see Phobius details amino acids 347 to 370 (24 residues), see Phobius details PF04235: DUF418" amino acids 228 to 388 (161 residues), 150.7 bits, see alignment E=1.9e-48

Best Hits

KEGG orthology group: K07148, uncharacterized protein (inferred from 78% identity to vap:Vapar_3571)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>ABID97_RS20750 DUF418 domain-containing protein (Variovorax sp. OAS795)
MTAPDSAPDDRQHMVDALRGFALLGILVVNIASFASSYYAQGVPDPLGLSLADRIASFVR
AFAFETKFYLLFSFLFGYSFTLQMRAAERDGKPFVPRMARRLLGLWVLGVAHAVLLYYGD
ILMAYAVLGAVLLMLRRRGDVLLACAAIGLVLLTSLAWAAIGRMYTQMDMQMGVQAAYGL
ATAAEAAYRDSPAAVVVQHLRDLSQTWWVTVLVQAPEALAMFFLGFIAGRRGLLAHVEAH
RSALWRVWWWGLAVGLPGALAYGLPALRLNEDVRELHDLAITLLTGPFLTAAYAAGMLLL
FQTGRGRMLARVLAPAGRMALTNYLLQSLACAWIFLAYGLRWIGTIGPLATFGVALAVFA
GNLLLSAWWMGRFAYGPVEWLLRAFTYLRLPPMRRGGLEAQRGGAES