Protein Info for ABID97_RS20620 in Variovorax sp. OAS795

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 PF00005: ABC_tran" amino acids 30 to 171 (142 residues), 121.2 bits, see alignment E=5.4e-39 PF08402: TOBE_2" amino acids 257 to 340 (84 residues), 38.6 bits, see alignment E=9.3e-14

Best Hits

KEGG orthology group: K02052, putative spermidine/putrescine transport system ATP-binding protein (inferred from 93% identity to vpe:Varpa_4050)

Predicted SEED Role

"ABC transporter ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (367 amino acids)

>ABID97_RS20620 ABC transporter ATP-binding protein (Variovorax sp. OAS795)
MNAVAALPPAAVEIVALSKRYAAGTPAAVDRIDLRIASGSYCCLLGPSGCGKSTTLRMIA
GHESVTSGDILLDNRNITDLPAAQRGTAMMFQSFALFPHLSATDNVAFSLKMKGVGKAER
QKRARDLLERVAMGHLAERKPGELSGGQQQRVALARALITEPRVLLLDEPLSALDPFLRI
QMRAELRRWQKELGLTFVHVTHSQEEAMALADTMVVMNHGVIEQVGSPHQIYNHPANEFV
ARFMGGHNVFDTAAGPIAVRNDHMRIAPASEGAASHGLAAAVTDVEYQGTYVLLGLALEA
APPGRRNVSVLMGEAAFLASPYAQGETVRLAWAEADARALAAPPQAPPPHPIPAPSPATF
HTEALSP