Protein Info for ABID97_RS20150 in Variovorax sp. OAS795

Annotation: cupin domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 PF08007: JmjC_2" amino acids 104 to 217 (114 residues), 120.9 bits, see alignment E=2.5e-39 PF20514: ROXA-like_wH" amino acids 275 to 378 (104 residues), 40.8 bits, see alignment E=2.1e-14

Best Hits

KEGG orthology group: None (inferred from 92% identity to vap:Vapar_3437)

Predicted SEED Role

"FIG074102: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (380 amino acids)

>ABID97_RS20150 cupin domain-containing protein (Variovorax sp. OAS795)
METTQPLPLLGGLSAAQFMRRYWQKKPLLVRQAIPAMVPPIERGALFALAEREDVESRLI
RHGKAGWTLRQGPLARRALPPLKQPEWTLLVQGVDLHHEGVHALLQQFRFLPDARLDDLM
ISYASDRGGVGAHFDSYDVFLLQAQGTRRWSIGRQSDLRLQEGVPLKILENFEPEQSFVL
EPGDMLYLPPRYAHDGVAVGDDCMTCSIGLRSSASGELGADLLARMAQAYSEALEDAGPA
ELARYRDPSQPAVDTPAAMPAALQAFARKAVEAALRDPDAIDRALGESLTEPKANVWFGE
GTDAPDVLNQVALDRRTRMLYDARHLYINGESFRAGGADATLMRRLADRRALGPRELSRA
SEGARALLAEWCEAGWLHAE