Protein Info for ABID97_RS20110 in Variovorax sp. OAS795

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 49 to 70 (22 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 102 to 126 (25 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 167 to 187 (21 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 251 to 273 (23 residues), see Phobius details amino acids 282 to 302 (21 residues), see Phobius details amino acids 308 to 334 (27 residues), see Phobius details amino acids 341 to 360 (20 residues), see Phobius details amino acids 372 to 391 (20 residues), see Phobius details PF07690: MFS_1" amino acids 16 to 317 (302 residues), 102.7 bits, see alignment E=1e-33 amino acids 220 to 390 (171 residues), 52.8 bits, see alignment E=1.5e-18

Best Hits

KEGG orthology group: None (inferred from 93% identity to vap:Vapar_3429)

Predicted SEED Role

"Probable MFS transporter precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>ABID97_RS20110 MFS transporter (Variovorax sp. OAS795)
MQASAPTLSVKQVLICGAMIVTLSMGIRHGFGLWLQPITQAQDWTRQTFSFALAIQNLSW
GIFGVFAGMLADRFGAFRVLVGGAAFYALGLLGMAYSPTPLLFTLSAGVLIGAAQAGTTY
AVVYGVIGRQIPAERRSWAMGVAAAAGSFGQFLMAPIEGRLIGTLGWQTALAVVAVLVLV
IVPLAFGLREPQRGALAGHRDQSVLQAVGEAFRYPSFGLLMAGYFVCGFQLAFIGIHMPT
YLRDQRLAADVAGYALALIGLFNVFGTYTVGLLGQKMAKRKILAAIYFARAVSIVLFLLV
PISPLSVYVFSAAMGFLWLSTVPATNAIIAGIFGVAHLSMLSGFVFLSHQVGSFIGVWLG
GYLYDTTGSYDIVWYIAIGLGVFAALINLPVKEGAIARGAQPAAVPG