Protein Info for ABID97_RS19835 in Variovorax sp. OAS795

Annotation: bpX6 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 887 transmembrane" amino acids 203 to 222 (20 residues), see Phobius details amino acids 249 to 269 (21 residues), see Phobius details PF19922: bpX6" amino acids 14 to 126 (113 residues), 140.2 bits, see alignment E=1.2e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (887 amino acids)

>ABID97_RS19835 bpX6 domain-containing protein (Variovorax sp. OAS795)
MQLPDPARMPAAQVRHPVLKGWQPVSGLWFPSEWLTGSVRARRIVEGWRAGAQLFRFAHG
DLLRFANPVSLDCNQLAGWPLRSEGTTLCSAELGPEERAALPVADLWLVQGGEVLALQLS
QAALFDASTWLDAGPAMLDTFDCRQTLPEPVLLDAEGHGVRELLGDAIPPASEEQREFLK
AMAARARATGRPPGTAPGGGFKGWWGGAGLALIVLSLLRGGWTPGLLPPVLLPKSAATGR
SFFAPLNASSIYVGLVTLLLAALVIWAVTRVESRRARRSKSGEPVAAPQTAHEGSSGTAT
SPSSSMRPRGSGRTLRSRWRDWIVRMAVASRFSKLLGRQQAAYMRRMLRMFDEGDLMEAL
RHAIPLGGEAADAGQAFGSPGRRDSLALSQSLGSSSSIYLDEGFENHLRQLYRRSFEKLD
REGRTDEAVFVLAELLQSRQEALDYLEKHQRYAQAAELALAWDRPPEIIVRLLCLAGDWR
RAIAVARRDDAFANAVLQLQPKWPEMANRLREEWGQLLAQKGEWLRAVDAVWPVVAAREQ
AVAWLLAAESADGRLAARALVQRALLLPDTLGACAERLRALRDDPLLHRERAALASELLA
VSGHNASSRGLISVLAPALLADHSGSHGRMHKRAFQALMRLDADPLLRLDMPGSEMPGFE
TRPLAKQSSLLTLDVPSRGAHAIHDAALLEDGRYLLALGEAGAVMTDSAGGVLARFAVPA
YRLVPARSGRVALALAQRDGLWRVSRLDLMQRRIDDLGLSEISHFSGEFDGNSWTVVRGN
RIQVLDTGRSLQDVLWQVAELPGEVVDFTAHARPGTVRRSRRCCRLQPVALPVSAAAFVE
PRANGRCRHLDLQAHVASTARRLSNIWRNQGNRRLVPAVAGCAMQRG