Protein Info for ABID97_RS19585 in Variovorax sp. OAS795

Annotation: TRAP transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF03480: DctP" amino acids 31 to 289 (259 residues), 109.2 bits, see alignment E=1.3e-35

Best Hits

KEGG orthology group: None (inferred from 65% identity to pol:Bpro_1780)

Predicted SEED Role

"TRAP transporter solute receptor, unknown substrate 5"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (320 amino acids)

>ABID97_RS19585 TRAP transporter substrate-binding protein (Variovorax sp. OAS795)
MKHLLLALLLAAASAQAETKWQLATGYRAESFHTQNIAWFAAEIERTTAGALRIEVRPNN
TLFKLADIREAVQTGQVQAGETIMSSLVEAIPIAGADAIPFVVGNYADARRLWDLQRPLI
DKHFAARGLKALYAVPWPPQGLYTVAPVRSAADFKGTRMRTYNQATVRIAEMMGATPVDV
PMVDVRKALAAGQLDSMITSAVTGVENQVWGQFRHYHEINAWFPKNIVFVNLKAFDALPP
AARQAVLTAAGEAELRGWAKSQEEADSATRKLKAEGMQVDRVPSSFDAELKRYGERFSRE
WVRSVGNEANSIFVPYYFQR