Protein Info for ABID97_RS19495 in Variovorax sp. OAS795

Annotation: glucan biosynthesis protein D

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 532 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR01409: Tat (twin-arginine translocation) pathway signal sequence" amino acids 2 to 28 (27 residues), 17.4 bits, see alignment (E = 2.3e-07) PF04349: MdoG" amino acids 40 to 529 (490 residues), 620.5 bits, see alignment E=1.2e-190

Best Hits

Swiss-Prot: 67% identical to OPGD2_RALSO: Glucans biosynthesis protein D 2 (opgD2) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K03670, periplasmic glucans biosynthesis protein (inferred from 96% identity to vap:Vapar_3273)

Predicted SEED Role

"Glucans biosynthesis protein D precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (532 amino acids)

>ABID97_RS19495 glucan biosynthesis protein D (Variovorax sp. OAS795)
MLDRRSFLAAGGAAAALAALGLPEEALAANGLQLSQPAPFSFDRLVAQAKRLASQPYAAA
APLAPDVLERIDYDAHGKIKFDPVNALFRDGPGAFPVTFFHLGRFFQTPVRMHVLENSDG
DAFAREVLYSPSYFSMPPDSPARALPPGAGFAGFRLQESRLGDQAKLDWQKNDWVAFLGA
SYFRAIGELYQYGLSARGLALDVAVPDKPEEFPTFTRYYFETPAATNTTSMTVYALLEGP
SVTGVFKFVMQRGKAVIMDIDSRLFLRRDVSRLGLVPLTSMYWYSETIKPTAIDWRPEVH
DSDGLAIWNGAGERIWRPLNNPTQTRASAFADTKPRGFGLLQRDRAFDHYQDGVNYEKRP
SLWIEPLGDWGEGSVQLIEIPTDDEIHDNTVAFWVPKADAKAGASYSLQYRLHWTDQEPF
PSPLARCVATRIGRGGQPGQPRPPGVRKFMVEFVGQPLTTVPFGVKPELVLTAPRGKFSY
IFAEAVPNGVPGHWRAQFDYTPEGNEPVDMRLYLKTGDKTLTETWLYQYQPG