Protein Info for ABID97_RS19160 in Variovorax sp. OAS795

Annotation: glycosyltransferase WbuB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 transmembrane" amino acids 85 to 103 (19 residues), see Phobius details amino acids 109 to 128 (20 residues), see Phobius details PF13579: Glyco_trans_4_4" amino acids 16 to 202 (187 residues), 86.4 bits, see alignment E=5.6e-28 PF13439: Glyco_transf_4" amino acids 16 to 205 (190 residues), 50.2 bits, see alignment E=6.3e-17 PF00534: Glycos_transf_1" amino acids 229 to 390 (162 residues), 74.8 bits, see alignment E=1.2e-24 PF13692: Glyco_trans_1_4" amino acids 237 to 375 (139 residues), 72.6 bits, see alignment E=8.1e-24

Best Hits

KEGG orthology group: K03208, colanic acid biosynthesis glycosyl transferase WcaI (inferred from 89% identity to vap:Vapar_3198)

Predicted SEED Role

"Colanic acid biosysnthesis glycosyl transferase WcaI" in subsystem Colanic acid biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (415 amino acids)

>ABID97_RS19160 glycosyltransferase WbuB (Variovorax sp. OAS795)
MKILLYSMNFTPELVGIGKYSGEMAQWLHAKGHDVRVIASPPFFPHWAPFEGHSAWAYRK
TVYDGITVWRAPTWVPARPRALARMAHLFSFMLSSMPLLFAQMRWRPDLVFVVEPPLFCA
PTVLFFSRMLGIKSWLHIQDYEVDAAFGLGLVRGTRVRRFALSVERWLLSRFNRVSTISA
AMLDKARDKGIDETRLVLLPNWVDVRSIYPQAAGTAEAAAPVNGYRTMLGIPPDDVVVLY
AGSLGNKQGIELLADAARQLAAAGHIHFVLCGNGPSREPLKAACANLDRVHFLDLQPAER
LNELLGMADIHVLPQRADAADLVMPSKLGGMLASGKAVIVTAHEGTELSNVVAGRGLVVA
PGDADALSDAIARLAASRPQREAMGAAGRSFAETQLDRNAILLRLEKELLRCVAD