Protein Info for ABID97_RS18000 in Variovorax sp. OAS795

Annotation: flavodoxin family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 PF12724: Flavodoxin_5" amino acids 6 to 103 (98 residues), 35.4 bits, see alignment E=1.9e-12 PF03358: FMN_red" amino acids 45 to 109 (65 residues), 35.8 bits, see alignment E=9.2e-13

Best Hits

Swiss-Prot: 51% identical to FLDP_PSEAB: Flavodoxin FldP (fldP) from Pseudomonas aeruginosa (strain UCBPP-PA14)

KEGG orthology group: None (inferred from 98% identity to vpe:Varpa_3544)

Predicted SEED Role

"Multimeric flavodoxin WrbA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (183 amino acids)

>ABID97_RS18000 flavodoxin family protein (Variovorax sp. OAS795)
MANIVVVFHSGYGHTQRIAQAVAESAGAQLLAIDADGNLPEGGWETLAAADAIVFGSPTY
MGGVSWQFKKFADASSKVWYTQGWKDKLFAGFTNSATMNGDKVATMAYLWTLAMQHSGLW
VSMGILPTNNKAATRDSMNYVGGYGGLLTQSPSDASPAEMFKGDFDTARAFGERIAEVAR
SRA