Protein Info for ABID97_RS17935 in Variovorax sp. OAS795

Annotation: bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 PF00383: dCMP_cyt_deam_1" amino acids 6 to 106 (101 residues), 72.7 bits, see alignment E=3.1e-24 PF14437: MafB19-deam" amino acids 9 to 123 (115 residues), 36.8 bits, see alignment E=5.1e-13 TIGR00326: riboflavin biosynthesis protein RibD" amino acids 11 to 364 (354 residues), 352 bits, see alignment E=3.5e-109 TIGR00227: riboflavin-specific deaminase C-terminal domain" amino acids 154 to 366 (213 residues), 178.7 bits, see alignment E=1.2e-56 PF01872: RibD_C" amino acids 155 to 362 (208 residues), 159.8 bits, see alignment E=1.2e-50

Best Hits

KEGG orthology group: K11752, diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC: 1.1.1.193 3.5.4.26] (inferred from 88% identity to vpe:Varpa_3522)

MetaCyc: 54% identical to diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase (Burkholderia glumae)
Diaminohydroxyphosphoribosylaminopyrimidine deaminase. [EC: 3.5.4.26]; 5-amino-6-(5-phosphoribosylamino)uracil reductase. [EC: 3.5.4.26, 1.1.1.193]

Predicted SEED Role

"Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)" in subsystem Riboflavin, FMN and FAD metabolism (EC 1.1.1.193, EC 3.5.4.26)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.1.193 or 3.5.4.26

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>ABID97_RS17935 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD (Variovorax sp. OAS795)
MPSPDQDAQHMATALRLASEALLLTDPNPRVGCVLCDAQGTVLGQGHTQQAGGPHAEVMA
LRDAAARGHAVEGATAYVTLEPCAHHGRTGPCCDALIAAGIGRVVASLADPNPLVAGQGF
ERLRAAGVAVETGPGAAESRELNIGFFSRMVRKLPWVRLKVAASLDGKTGLANGVSQWIT
AEAARADGHAWRARASAVLTGVGTVLEDNPRLDVRLVDTPRQPHLVVVDSQLQTPPDAHV
FIAGRPVWIYAAARDETRAQALEARGATVTCLPDAGGKVDLAAMLQDLAQRGVNELHVEA
GHKLNGSLIREGCVDELLVYLAPKLIGSGLDMASRLHAEGPLTALAGALPLEFRSVQMLG
PDLRIVSRVKGRDSF