Protein Info for ABID97_RS17715 in Variovorax sp. OAS795

Annotation: efflux RND transporter periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 54 to 374 (321 residues), 213.6 bits, see alignment E=1.8e-67 PF16576: HlyD_D23" amino acids 68 to 294 (227 residues), 62.5 bits, see alignment E=7.4e-21 PF13533: Biotin_lipoyl_2" amino acids 88 to 127 (40 residues), 24.1 bits, see alignment 5e-09 PF13437: HlyD_3" amino acids 191 to 290 (100 residues), 64.4 bits, see alignment E=2.9e-21

Best Hits

KEGG orthology group: None (inferred from 91% identity to vap:Vapar_2411)

Predicted SEED Role

"Secretion protein HlyD precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>ABID97_RS17715 efflux RND transporter periplasmic adaptor subunit (Variovorax sp. OAS795)
MKSIKRSTLALALLALVIVIAAAVWLVRKPASETQAAADKAKPGAPAARPTLTVTVAKPE
LTELTLTLAANGNVAAWQEASVGSESTGLKLAEVRVNVGDVVTKGQVLAVFSPETVQADI
AQSRASLAEARATAADAAGNAARARTLQATGALSQQQINQYQTAEQTAKARVEAAEAVLA
AQQVRGRNTQVLAPDDGVISSRTATVGSVVGAGTELFRLIRQGRLEWRAEVTSAELSRIA
VGTTAFVVSASGAQVRGKVRSIAPTVDPQTRAALVYVDLPNVQQNTGIKAGMFARGDFEL
GRSSAPTVPQASIVPRDGFNNVFMLLPDNRVAQLKVQTGRRVGERVEITSALPEGAQIVV
QGAGFLNDGDLVRVVPASAPAAAGAQPAAAPASAPAGKPDNETKARP