Protein Info for ABID97_RS17710 in Variovorax sp. OAS795

Annotation: efflux transporter outer membrane subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 497 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 15 to 476 (462 residues), 318.1 bits, see alignment E=5.1e-99 PF02321: OEP" amino acids 64 to 263 (200 residues), 53.6 bits, see alignment E=1.3e-18 amino acids 291 to 474 (184 residues), 103.8 bits, see alignment E=5.1e-34

Best Hits

KEGG orthology group: None (inferred from 93% identity to vap:Vapar_2412)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein, NodT family" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (497 amino acids)

>ABID97_RS17710 efflux transporter outer membrane subunit (Variovorax sp. OAS795)
MRRLRWFAAVCLPLGLALGGCGLTRPPASVEAPFPAQWHAPLPHGGSVVSLADWWRQLDD
PLLVELIAAAEAASPNLASAAARVAEARSTRVQAGAALLPSLDGTLSASRGVSGSSFGAG
GSAASSSASSSAAIAPVTTLQAGLQSKWEIDLFGRLRADRDSAEQKLGSATAKWHDARVA
VAAETANAYFAERACQQQLRVAESDAKSRGETARLTDLSARAGFTAPADAALARASASDA
SGRLTQQRALCAVQRKALVALSGVDEPVLEQKLAASPAQRALPVVGSIASVPAEAISQRP
DVYAAELGVASASADVGSAEAERYPKLSISGSIGRMQIRTSGFRESLDTWTIGPVSLTVP
LLDGGARAANSDAAKARYTEAVSLYRANVRQAVREVEEALVNLDATDARATDADSAVKNY
QASFDATQARYQSGLASLFELEDSRRTLFAAQTARVSLQRERTEAWVALYRSMGGGWARP
ESTSLTSNPAAKVATSP