Protein Info for ABID97_RS16705 in Variovorax sp. OAS795

Annotation: ribonuclease G

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 TIGR00757: ribonuclease, Rne/Rng family" amino acids 12 to 445 (434 residues), 477.6 bits, see alignment E=1.7e-147 PF10150: RNase_E_G" amino acids 131 to 412 (282 residues), 325.1 bits, see alignment E=3.7e-101 PF20833: RNase_E_G_Thio" amino acids 423 to 505 (83 residues), 29.9 bits, see alignment E=4.9e-11

Best Hits

KEGG orthology group: K08301, ribonuclease G [EC: 3.1.26.-] (inferred from 98% identity to vap:Vapar_2690)

Predicted SEED Role

"Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)" in subsystem Bacterial Cell Division or RNA processing and degradation, bacterial (EC 3.1.4.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.4.-

Use Curated BLAST to search for 3.1.26.- or 3.1.4.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (508 amino acids)

>ABID97_RS16705 ribonuclease G (Variovorax sp. OAS795)
MQDILINWSPQETRVALVEHGAVQELHVERTLERGLVGNIYLGKVSRVLPGMQSAFIDVG
LERTAFLHVADIVAPFTPGSRPSAPAPEREHRNGGPIVPIEKQVFEGQSLLVQVIKDPIG
TKGARLSTQISIAGRLLVFLPQDNHIGVSQKIPSDQRDSLRARMLALIEAAAAADSGGVV
PANTGGFILRTNGEDSSDAELAEDIAYLRKTWSRIREASGKMPAMSLLHQDLSLLQRVLR
DMTSEDTQTIRIDSREQFEVLLKFGLEYMPQAAGKLQHYKGERPIFDLYSVDEEIAKALG
RRVELKSGGYLVVDQTEALTTVDVNTGGFVGARNFDDTIFKTNLEAAQAIARQLRLRNLG
GIIIVDFIDMGRDDHREQVLAEFRKQLARDRVKTTAGGFSQLGLVEMTRKRTRESLAHML
CEPCAACGGQGIVKTARSVAYDAMREILREARQFTPREFRIVSSPQVIELFLDEESQHLA
GLSDFIGKPISLQAEPAIGQGQYDIVLL