Protein Info for ABID97_RS16680 in Variovorax sp. OAS795

Annotation: tRNA threonylcarbamoyladenosine dehydratase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 PF00899: ThiF" amino acids 23 to 247 (225 residues), 131.8 bits, see alignment E=1.2e-42

Best Hits

KEGG orthology group: None (inferred from 91% identity to vap:Vapar_2695)

Predicted SEED Role

"Probable HesA/MoeB/ThiF family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (267 amino acids)

>ABID97_RS16680 tRNA threonylcarbamoyladenosine dehydratase (Variovorax sp. OAS795)
MDVVEDIAAAPDFARRFGGLQRLYGVAGAARIRNAHVLVAGIGGVGSWAVEALARSGVGT
LTLVDLDHVSESNINRQIHALDATVGQAKVEAMRERIAQINPECRVLAIDEFVEPGNWTT
LLETAQHANGRVTAVIDACDQVKAKLTMAVWARASEAAFITAGAAGGKRQAHKVDIDDLA
LVTHDPLLAQLRQRLRKEHGAPREGRKLGVACVFSRESVAPPDASCAIEGDGSLNCHGYG
SVVSVTATFGQCAAGWVLDKIASNAAL