Protein Info for ABID97_RS16615 in Variovorax sp. OAS795

Annotation: ATP-dependent RNA helicase HrpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1289 TIGR01967: RNA helicase HrpA" amino acids 11 to 970 (960 residues), 1348.1 bits, see alignment E=0 PF00270: DEAD" amino acids 26 to 181 (156 residues), 33.4 bits, see alignment E=9.5e-12 PF00271: Helicase_C" amino acids 237 to 359 (123 residues), 37.3 bits, see alignment E=7.4e-13 PF21010: HA2_C" amino acids 450 to 505 (56 residues), 31.6 bits, see alignment (E = 4.8e-11) PF07717: OB_NTP_bind" amino acids 580 to 655 (76 residues), 40.7 bits, see alignment 5.4e-14 PF11898: DUF3418" amino acids 670 to 1286 (617 residues), 696.2 bits, see alignment E=1e-212

Best Hits

Predicted SEED Role

"macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif."

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1289 amino acids)

>ABID97_RS16615 ATP-dependent RNA helicase HrpA (Variovorax sp. OAS795)
MTTTTPSAPLRIDFPESLPVSARRDEIMAAIEAHQVVIVCGETGSGKTTQLPKIALALGR
GKLNAPPGKGRLIGHTQPRRIAASSVAKRIAEELKTPLGDVVGFKVRFQDRLSRDASVKL
MTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLREILPRRPDLKVIVTSATI
DADRFAQHFASRGGPAPIIYVSGRTFPVEQRYRPFEESREHDLNDAIADGVDELWRDPHN
AGDILVFLPGEREIREAADHLRRHLSHQPLLRNAEVLPLFARLSGPEQDRIFDGHTGRRI
VLATNVAETSLTVPGIRYVIDTGTARVKRYSFRSKVEQLLVEPISQAAANQRAGRCGRVA
NGICIRLYDEKDFEGRPRFTDPEILRSSLAGVILRMKSLRLGDVARFPFLEAPSPRAIAD
GYQLLNELGAVDDANELTATGAELAKLPLDPRVGRMILEARTRGALEEVLVIASALSVQD
VRDRPMDAQQQADQAHSKFDDEKSEFSGYLRLWKWIADARGGHGDTHKLSNRQYEQLLRQ
NFINIRRVREWRDIHSQLLTVVTEHKWRINAEPAGYEPLHLSMLAGLLGNVGWKLEDDEA
YLGARGIKFYKHPGAHLKKKPGRWIVAAELVETTRLFGRGIANIEPQWLEQVAGHLLKKQ
LLDPHWEKKGAQVSALERATLYGLVVYSGRRVDFTKVDPVAAREIFIREALVAGQWESKF
PFLVANRKLVREVEGLEHKSRRQDVLVDDELIFAFYDAQLPADVASGITFENWYRHASRE
QPRLLFLTREELMRHQAAGITTQSFPSTLRLGGVDCAATYLHEPGDAKDGLTVSVPLFVL
NQVSEERCEWLVTGMLKDKIQALLKSLPQRPRSRLVPLPDSAAKLAEELSAPEVFGHGSL
TDVLLKRVRDATSIDVKRADFKLDMLPPHLFMNLRIVDEHGRQLGMGRNLGALKAELGAQ
ARGAFQALAGLNVKASPDRKPAQAAEGQAPAKGHAAAAAPATPSLPAGQRYTSWSFGELP
ELMEVRRGAQSLIGFPALRDEGDAVTIEVFDEPAVAASKHRAGLRRLFALQLKDALKYLE
KNIPDLQKMAVAYMPLGTSEELRTQIIDVAIDRAFLQEPLPADEFAFKRRLEEGRGRLTL
IANEVARLASSILVEYAAAARKIKDTKIQPEAVQDAAQQLQRLVGKRFIADTPWTQLQHF
ARYLKAIVLRLDKLRADPARDAAKLAELRPQEQRYWRLVAERKGAVDERMLEFRWLLEEL
RVSFFAQELRTPQPVSIKRLDKAWAQLQA