Protein Info for ABID97_RS16495 in Variovorax sp. OAS795

Annotation: ribosome maturation factor RimP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 PF02576: RimP_N" amino acids 7 to 88 (82 residues), 43.8 bits, see alignment E=1.4e-15

Best Hits

Swiss-Prot: 94% identical to RIMP_VARPS: Ribosome maturation factor RimP (rimP) from Variovorax paradoxus (strain S110)

KEGG orthology group: K09748, ribosome maturation factor RimP (inferred from 94% identity to vpe:Varpa_2847)

Predicted SEED Role

"FIG000325: clustered with transcription termination protein NusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (215 amino acids)

>ABID97_RS16495 ribosome maturation factor RimP (Variovorax sp. OAS795)
MALQQTVEQTVAGLGYDLVEIERSAGGLLRVTIDLPWTAPTSEAVAAGIPEPFVTVEDCE
KVTRQLQFALEVDGADYKRLEVSSPGIDRPLRNEQDFERFVGEVIDITLKAPMGAAAAGQ
VSANRKKFRGTLERAEKTEGAEAAPGWQIVWSDAPEPKPGQKVSKKRAPAKLQALGFVLD
ELRDARLAPIVDFKGRRAKTQPGFSDIDDGTNVPD