Protein Info for ABID97_RS16075 in Variovorax sp. OAS795

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF13433: Peripla_BP_5" amino acids 19 to 341 (323 residues), 69.4 bits, see alignment E=4.8e-23 PF13458: Peripla_BP_6" amino acids 19 to 353 (335 residues), 247.4 bits, see alignment E=5.2e-77 PF01094: ANF_receptor" amino acids 51 to 345 (295 residues), 42.5 bits, see alignment E=6.9e-15

Best Hits

KEGG orthology group: None (inferred from 93% identity to vpe:Varpa_2587)

Predicted SEED Role

"Extracellular ligand-binding receptor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (385 amino acids)

>ABID97_RS16075 ABC transporter substrate-binding protein (Variovorax sp. OAS795)
MLAFAITAAFTSQAQAQAVKVGLAMDLSGPFAVGGAEAKAGFAVAMKQLGGKLGGVPVEF
VEADTGGNPDLARQVVERMLLRDKIDLFTGPVGSSVALAVGAPLFAAKVPYLSSNTGPSD
YSGAKCNAYFFGASYPNDAYHEAAGKFASDKGFKKVALIAPSYPGGKDAINGFKRNFKGT
VGDELYTKLGQLDYSAELAQIRAAKPDALYFFLPGAMGVSFIKQFVGAGLSKDVALISTA
FSADEDMIPAVGEPMLGLFNTAHWSYDLDNPANKRFVADFRQQNNGRNPSFYAGQAYDVL
MAMDAAVRDVGGKVADRPALLKAIKAARYKSVRGDFSYGANNFPIQNYYLRVIGKDASGR
ITNKLIGTVLQNYQDSSSAKCPMKS