Protein Info for ABID97_RS15930 in Variovorax sp. OAS795

Annotation: Tex family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 791 PF09371: Tex_N" amino acids 3 to 76 (74 residues), 102.8 bits, see alignment E=2.4e-33 PF22706: Tex_central_region" amino acids 131 to 320 (190 residues), 200.8 bits, see alignment E=6.3e-63 PF16921: Tex_YqgF" amino acids 336 to 471 (136 residues), 168.7 bits, see alignment E=2.7e-53 PF14635: HHH_7" amino acids 484 to 576 (93 residues), 28.6 bits, see alignment E=5.4e-10 PF12836: HHH_3" amino acids 511 to 575 (65 residues), 92.2 bits, see alignment E=6.1e-30 PF17674: HHH_9" amino acids 581 to 650 (70 residues), 79.5 bits, see alignment E=9.8e-26 PF00575: S1" amino acids 670 to 740 (71 residues), 70.7 bits, see alignment E=4e-23

Best Hits

KEGG orthology group: K06959, uncharacterized protein (inferred from 98% identity to vap:Vapar_2875)

Predicted SEED Role

"Transcription accessory protein (S1 RNA-binding domain)" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (791 amino acids)

>ABID97_RS15930 Tex family protein (Variovorax sp. OAS795)
MQKIIRQLAAEIKVGEHQVKAAIELLDGGATVPFIARYRKEVTDGLDDIQLRELEARLSY
LRELEDRRAAVLKSIDEQGKLTPQLRAAIEFAPTKQELEDLYLPFKQKRRTKGQIAREFG
IEPLADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPAVLDGVRDILSERWAED
AALVQRLREWLWAEGLLKSTLMAGKDENNADVAKFRDYFDYDEPIGRVPSHRALAVFRGR
TLEILDAKLVLPVEPEPGKPSIAEGKIALHLGWSHAARPADDLIRKCVAWTWRVKLALST
ERDLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDATGKL
VETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKMA
AQAGAPEMQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKI
DPKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKAV
VRWRESNGAFSTRKQLLDVTGFGPKAFEQSAGFLRIRGGADPLDITGVHPETYPLVEQII
VKTGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFND
GVDDIKDLVEGMILEGTVSNVAQFGAFIDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDI
VKVKVMEVDVARKRIGLSMKLDAAPARRDGPRDNRFEGASRGQQQGARRDNAPQPAGQMA
SAFAKLQGLRK