Protein Info for ABID97_RS15820 in Variovorax sp. OAS795

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 36 to 58 (23 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details amino acids 128 to 152 (25 residues), see Phobius details amino acids 158 to 181 (24 residues), see Phobius details amino acids 202 to 224 (23 residues), see Phobius details amino acids 237 to 256 (20 residues), see Phobius details amino acids 267 to 286 (20 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 327 to 348 (22 residues), see Phobius details amino acids 357 to 375 (19 residues), see Phobius details PF07690: MFS_1" amino acids 9 to 318 (310 residues), 138 bits, see alignment E=3.9e-44 amino acids 243 to 386 (144 residues), 37.9 bits, see alignment E=1.1e-13 PF06779: MFS_4" amino acids 13 to 372 (360 residues), 27 bits, see alignment E=2.9e-10

Best Hits

Swiss-Prot: 48% identical to YDHP_ECO57: Inner membrane transport protein YdhP (ydhP) from Escherichia coli O157:H7

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 92% identity to vap:Vapar_2910)

Predicted SEED Role

"Putative drug efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (396 amino acids)

>ABID97_RS15820 MFS transporter (Variovorax sp. OAS795)
MPIALLALTAGAFGIGTTEFVIMGLLMQVSADLGVSITAAGLLISGYALGVAVGAPLLTI
ATRKLPRTTVLLALMAIFTLGNLACALAPNYELLMAARVVTSLAHGTFFGVGSVVATGLV
APERRASAIAIMFTGLTAATLLGVPAGAWLGLHHGWRATFWAVALIGVLAFAVLALFVPH
VRSDAKAVPLRDELAVLARPQVLLGLAMTVLGFAGVFAVFTYVQPLLTQVTGLPESAVSP
ILLVFGGGLAVGNILGGRLADRATMPAVIGTLVALAAVLGAMQFTIATPFTAVVFVGLLG
IASFATVAPMQLRVLEKASGAGQNLASSLNIAAFNLGNALGAWAGGVVIDHGPGLRALGW
VAALLTLAGLAIALWSRALDRREGRPSPADCASLQA