Protein Info for ABID97_RS15675 in Variovorax sp. OAS795

Annotation: phosphoribosylformylglycinamidine synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1331 TIGR01735: phosphoribosylformylglycinamidine synthase" amino acids 2 to 1330 (1329 residues), 1772 bits, see alignment E=0 PF18076: FGAR-AT_N" amino acids 33 to 154 (122 residues), 117.6 bits, see alignment E=6.1e-38 PF18072: FGAR-AT_linker" amino acids 176 to 224 (49 residues), 77.5 bits, see alignment (E = 1.8e-25) PF02769: AIRS_C" amino acids 430 to 583 (154 residues), 115.9 bits, see alignment E=3.9e-37 amino acids 850 to 984 (135 residues), 52 bits, see alignment E=1.8e-17 PF13507: GATase_5" amino acids 1079 to 1330 (252 residues), 340.2 bits, see alignment E=1.3e-105

Best Hits

Predicted SEED Role

"Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)" in subsystem De Novo Purine Biosynthesis (EC 6.3.5.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.3.5.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1331 amino acids)

>ABID97_RS15675 phosphoribosylformylglycinamidine synthase (Variovorax sp. OAS795)
MFEGGSALSDFRARQLLPRLQAIEPRIEGVAARFVHLVVTDAALGAADHDRFAALLTYGE
PFEALAKAGTSVVVTPRLGTVSPWASKATDIAHNCGLALRRVERVTQYHLKLKSPLIGKA
PVLEGDVLAAVAGPLHDRMTESVLATVDQAASLFSELPAQPMALVDVQGGGRDALVAANS
GFGLALAEDEIDYLVDAFTRLGRNPSDVELMMFAQANSEHCRHKIFNAQFTIDGVAQPQS
LFSMIRHTEKQNPQHTVIAYADNASVMEGTTIERFVARTDAQSYQKDSALSHVLMKVETH
NHPTAISPFPGASTGAGGEIRDEGATGRGSRPKAGLTGFTVSRLWPEEGHYGKPEHIASP
LQIMTEGPLGGAAFNNEFGRPNLLGYFREYEQTVASDIDTVQRGYHKPIMIAGGLGSIDA
TQTKKIQFPAGSLLIQLGGPGMRIGMGGSAASSMATGANAAELDFDSVQRGNPEIERRAQ
EVINHCWQQGAANPILAIHDVGAGGLSNAFPELTNDAGRGARFDLRAVPLEESGMAPKEI
WCNESQERYVLAIAPESLEQFKAFCERERCPFSVVGVATEERQLLVADEGAAVQPVDMPM
DVLLGKPPKMHRDVKTVARSFKPLDLTGVDLQKAAIDVLSHPTVASKRFLITIGDRTVGG
LSHRDQMVGPWQVPVADCAVTLADFKGFAGEAMSMGERTPLAALDAPASGRMAVAEAITN
LLAAPIELSRVKLSANWMAACGEPGEDAALYETVKAVGLELCPALGVSIPVGKDSLSMRT
QWKDNGEARKVTSPVSLIVTAFATLADVRGTLTPQLDAQEADTTLVLVDLGRGQHRMAGS
ILAQTLNQSGDRVPDLDDPAQLVALVNAVNALRADGKILAMHDRSDGGLFATACEMAFAG
HVGVALNVDMLVTEGDGISDSRMETGDAKNWAQQVSARREELTLKALFNEELGMVLQVRT
AERNEVMQVLRAHGLSAHSHFVGKTRPASSTMDAGKGKLEVWRDARSVFSATLHDLHQVW
DSVSWKIARERDNPACADAEHAAAGEPGDPGMHIFLPLPPGEGRGEGRGINAPAILQSRP
KVAILREQGVNSHVEMAYAFTEAGFEAHDVHMTDLQSGRADLAHFKGVVACGGFSYGDTL
GAGIGWARSITFNPKLAEQFKAFFGREDTFGLGVCNGCQMFAELADIIPGAEAWPRFTTN
QSERFEARLSMVEVLESPSLFFAGMAGTRLPIAVAHGEGYANFKHRGDAAKAIAAMRFVD
NHGNATEQYPFNPNGSAGGLTSVTTPDGRFTAVMPHPERVFRNIQMSWTGGDRSEPSPWM
RIWRNARRWVG