Protein Info for ABID97_RS15005 in Variovorax sp. OAS795

Annotation: sigma-54-dependent Fis family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 710 PF01590: GAF" amino acids 83 to 206 (124 residues), 46.3 bits, see alignment E=1.9e-15 PF00158: Sigma54_activat" amino acids 367 to 528 (162 residues), 223.5 bits, see alignment E=4.1e-70 PF14532: Sigma54_activ_2" amino acids 376 to 534 (159 residues), 65.8 bits, see alignment E=1.5e-21 PF07728: AAA_5" amino acids 385 to 504 (120 residues), 28.2 bits, see alignment E=5e-10 PF02954: HTH_8" amino acids 667 to 705 (39 residues), 41 bits, see alignment 3.9e-14

Best Hits

KEGG orthology group: None (inferred from 86% identity to vap:Vapar_6248)

Predicted SEED Role

"Nitrogen regulation protein NR(I)" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (710 amino acids)

>ABID97_RS15005 sigma-54-dependent Fis family transcriptional regulator (Variovorax sp. OAS795)
MVDALHAPGSPSQGWTTPSAMAVAPPRADRTELIEQWHQRCAALGLSRVERPDFEPMRRS
DLVVARERNQRLFTHAAPVMEMLLEQIVNTDSMIVLADTTGTILHSVGDDRFLQRANKVA
LTPGVSWAEHSKGTNAIGTTLVEETPTVVHGGEHFIHANNFLTCSAAPIFDPRGEMLGVL
DVTGDQRSYHQHTMGLVRMSARMIENQWLSDDYGNRLRLHFHGRAEFIGTLLEGIIVVGA
DGKILGANRSALDQLDMSIAAVRMQSLASLFGITASAVFDHFRSPLPAPMMLHAVSGQLF
HVSARFNGPQRSVVLDMPVSSVEPRMPEEPNARPSSAARGDEAAARQAGPSPHAPLSGLH
YLDTGDAQIAATLLKVRRVINRDIPLLVLGETGTGKELLARAVHQDSNRARQPFVAVNCA
SIPESLIEAELFGYEEGAFTGARRKGAVGRIVQAHGGTLFLDEIGDMPLSLQARLLRVLQ
ERNVTPLGSLKSIPVDIAVIGATHRNLREMIAAGTFREDLYYRLNGLVVKLPPLRERSDL
DVVARRILLAECPQDTPEIAPAVLALFKAYAWPGNLRQLANVLRTAAVMSAGERHICEHH
LSDDFLEDARRVLSQAAPGAAAPAPSAPQAAALPQAAHAAAPPEHTMPPLRDSESLPVAA
PEAPRTLGEAEIDMIRSALAAADGNISVASKRLGISRNTIYRKLRWNKGE