Protein Info for ABID97_RS14865 in Variovorax sp. OAS795

Annotation: RDD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 transmembrane" amino acids 39 to 60 (22 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details amino acids 119 to 139 (21 residues), see Phobius details amino acids 145 to 163 (19 residues), see Phobius details PF06271: RDD" amino acids 29 to 176 (148 residues), 71.1 bits, see alignment E=5.9e-24

Best Hits

KEGG orthology group: None (inferred from 84% identity to vpe:Varpa_2547)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (188 amino acids)

>ABID97_RS14865 RDD family protein (Variovorax sp. OAS795)
MVFNSSENSESNLSSSSAEPSSSAPLSIVPGLWRRMACWLYEGMLLFAVVFVAGWLFSTL
GQMRDAMDARRHLLQAFLFVVFGVYFVWFWTRGQTLAMKTWNIRIVDPHGRPVTQRRALA
RYLLSWIWFLPPLAAIAPFKLSGGESAVLIFGWVAVWALLARFHPERQFWHDAWAGTRLI
TSKPMSRQ