Protein Info for ABID97_RS14710 in Variovorax sp. OAS795

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13379: NMT1_2" amino acids 36 to 261 (226 residues), 58.7 bits, see alignment E=1.7e-19 PF09084: NMT1" amino acids 45 to 259 (215 residues), 69 bits, see alignment E=1.2e-22 PF00497: SBP_bac_3" amino acids 60 to 207 (148 residues), 27.4 bits, see alignment E=4.9e-10 PF12974: Phosphonate-bd" amino acids 62 to 223 (162 residues), 30.5 bits, see alignment E=5.1e-11

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 95% identity to vpe:Varpa_2509)

Predicted SEED Role

"Hydroxymethylpyrimidine ABC transporter, substrate-binding component" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (344 amino acids)

>ABID97_RS14710 ABC transporter substrate-binding protein (Variovorax sp. OAS795)
MFPRRTLLTASAVAAATIALPRVFAQAKLEKTRISVAVGGKAAFYYLPLTISEQLGYFKA
EGLDVEISDFAGGARALQAVVGGSADVCSGAYEHTINLQAKNQFFQAFVLQGRAPQIAVG
VSTKNMPGYAGIPDLKGKKIGVSAPGSSTNMVANLVLSRGGLKASDVSYIGVGVAAGALT
ALRSGQIDAISNTDPVMTMLEQKGDVKIISDTRTLKGTQQVFGGPMPAACLYAPIDFIQK
NPNTCQALANAIVRGLKWLQTAGPGDIIKTVPETYLLGDRALYLASFDKVRESIATDGLV
PAEGPRTALTAISSFDTAVKPEKIDLMKTYTNDFARRAKDRFKA