Protein Info for ABID97_RS14665 in Variovorax sp. OAS795

Annotation: UvrD-helicase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1087 PF00580: UvrD-helicase" amino acids 21 to 460 (440 residues), 132.3 bits, see alignment E=7.1e-42 PF13245: AAA_19" amino acids 26 to 83 (58 residues), 26.1 bits, see alignment 2.2e-09 PF13361: UvrD_C" amino acids 562 to 659 (98 residues), 37.8 bits, see alignment E=3.9e-13 amino acids 776 to 873 (98 residues), 43.2 bits, see alignment E=9e-15 PF12705: PDDEXK_1" amino acids 939 to 1068 (130 residues), 28.7 bits, see alignment E=3.3e-10

Best Hits

KEGG orthology group: None (inferred from 93% identity to vap:Vapar_2325)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1087 amino acids)

>ABID97_RS14665 UvrD-helicase domain-containing protein (Variovorax sp. OAS795)
MNGAAYEHNGRHVTREAFYTVACDPRRSVAVEACAGAGKTWMLVSRILRALLEEGESACE
PHEILAITFTKKAAGEMRERLDQWLEQFAERSPEELARELVIRGVEPAAALAAVPRLKGL
YRRLLEGGRPVQFRTFHAWFAGLLRNAPLAVLRELGLPANYELLEDDAEARTRTWRPFFE
AVTADKEALADYYAVVATYGRSQTAKALGEALTRRVEFSLSDPASAVQHFSTMHPALEGM
DAPTDALGGEAARRRWLDRAAALGREANKTPQKAAEAIIDVFGTGEPPREARSAALAHLR
KNFFVAAEDRLTKNLQKYPAAQETEAELQTLCAAQAQHAAWLYQQRMTRLTRILISAFAG
VKRTHGWVDMNDVEQAAQLLLGQSALSGWVQERLDARIAHLLIDEFQDTNPLQWQALYGW
LSAYTGAGGSAPRVFIVGDPKQSIYRFRRAEPQVFIAAKKFVREGLGGELLNCDHTHRNA
CAVVGLVNQAMLAAQEAGEFDGYRAHTTERNDDGELLKLPPIDRDALNATAEAAHADDGM
LHWRDSLVTPRVLPEEQLLQKECEQAARWVAQRIADGTPPRQIMVLARRRNRLAAMQDAL
RQRHIPVQQPEKNELHDAPEVQDVVALIDALVSPAHDLSLARALKSPIFGIGDDALVQLA
LRQREQPSSSWFGLIRKGEGLPPELVEAGAKLKRWQRWLAALPPHDALDAIFHDGDVLAR
FGAAVPSAMRQGALANLRGLVAASLDIEGARFATPYALVRALRAGGVRAPSVAAPDAVQL
LTVHGAKGLEADTVLMLDCDAAAPRAQTMGVLVEWKGSDSAPTRFVFMASEKTPPGCATA
LLEEEQRARHREELNGLYVATTRARERLVLSSVQPARANEGSWWSRLASMCEPVEADEPL
IVLPLVSGAGSFPMKKMPVLAPAVLEPVVLNKAAEGTVDARAAAFGQAMHRLLEWAVPGE
ALPPAHVRAAAREFLLDAQQARGAAVLAERIRAGAGAWAWDERMIDWHGNEVTLVHEGET
LRIDRLVRERASGAWWILDYKSAARPERDAALIAQMQRYRAAVQHAYPGASVRVAFLTGQ
GELVNLE