Protein Info for ABID97_RS14355 in Variovorax sp. OAS795

Annotation: YihY/virulence factor BrkB family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 transmembrane" amino acids 31 to 55 (25 residues), see Phobius details amino acids 65 to 86 (22 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 139 to 166 (28 residues), see Phobius details amino acids 177 to 202 (26 residues), see Phobius details amino acids 214 to 237 (24 residues), see Phobius details amino acids 245 to 269 (25 residues), see Phobius details TIGR00765: YihY family inner membrane protein" amino acids 17 to 275 (259 residues), 88.2 bits, see alignment E=3.9e-29 PF03631: Virul_fac_BrkB" amino acids 23 to 278 (256 residues), 173 bits, see alignment E=5.1e-55

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 89% identity to vpe:Varpa_3671)

Predicted SEED Role

"Ribonuclease BN (EC 3.1.-.-)" in subsystem LMPTP YfkJ cluster or tRNA processing (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (307 amino acids)

>ABID97_RS14355 YihY/virulence factor BrkB family protein (Variovorax sp. OAS795)
MLMQLRALFDLCKEAVASWSNDYAPSMGAALAYYTVFSIAPLLLIVIAVAGLVFGREAAR
GEIFLQLADLMGAQGAAAVQGMLQAVNKPAEGVVATVVGIGLLVIGATTVFGELQDALDR
IWRAPARARNKGLFTLLRVRLLSFTMIMGIGFLLMVSLVASAALAALGKWWSPVFGAWAA
LAQVVNFVFSFAMVTVIFAMIYKIMPRAKVQWRDVWVGAGVTALLFTVGKHLIGLYIGKS
SVASGYGAAGSLVVVLVWVYYSAQIFLLGAEFTWVYAKTYGSLKHAGDGSEKANPSPTRD
APLPPKD