Protein Info for ABID97_RS13300 in Variovorax sp. OAS795

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 transmembrane" amino acids 30 to 54 (25 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 129 to 152 (24 residues), see Phobius details amino acids 162 to 184 (23 residues), see Phobius details amino acids 197 to 223 (27 residues), see Phobius details amino acids 235 to 252 (18 residues), see Phobius details amino acids 289 to 313 (25 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 157 to 253 (97 residues), 64.9 bits, see alignment E=4e-22 PF00528: BPD_transp_1" amino acids 175 to 362 (188 residues), 78.6 bits, see alignment E=2.5e-26

Best Hits

KEGG orthology group: K09971, general L-amino acid transport system permease protein (inferred from 71% identity to axy:AXYL_05914)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>ABID97_RS13300 amino acid ABC transporter permease (Variovorax sp. OAS795)
MSTTTHTDQPVLLAPPRVRAKLATRLRQCLFQSPASAVLTILTIWLVLMLAPPLVQWLLV
KASFQAPDAQACRDAGGACWAFIREKYRLILFGTYPHAEQWRPLLATALLVASIVWTAAR
RLAGLQIVGLWVFTIGAVATLMWGGFLGLAFVENTRWGGLPLTLILSTFGIAFAFPIGIL
LALGRRSRMPAIKAMCVAYIELIRGVPLISLLFMSSVMLPLFLPEGFAIDKLLRAQLAII
FFAAAYIAEIVRGGLQAIPKGQYEGAESIGLSYWQQTGKIVLPQALKVVIPPLVSTFIAL
FKDTSLVVIIGIFDLTQAAKAALSDPAWTGFGVEAYLFIGLIYFIFCYSISRYSRSLERN
LKR