Protein Info for ABID97_RS13015 in Variovorax sp. OAS795

Annotation: type VI secretion protein IcmF/TssM N-terminal domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1268 transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 32 to 52 (21 residues), see Phobius details amino acids 415 to 433 (19 residues), see Phobius details PF14331: IcmF-related_N" amino acids 176 to 418 (243 residues), 173.3 bits, see alignment E=3.3e-55

Best Hits

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1268 amino acids)

>ABID97_RS13015 type VI secretion protein IcmF/TssM N-terminal domain-containing protein (Variovorax sp. OAS795)
MKSLRKFIVWVLVLFLLAVFGWAVTLYLGWPWWSAIAIVSGALGLYFFYRFARRLVVAAR
SRSAIALPEAEQRQRTEAMSPKAVLKRRWKAAADTLRRSALRRHGNPLDVLPWYMMVGRS
GAGKTTALTRSRLSSPLQQIDRNAPIEQTANVDWWFFDDAVVVDCAGRYVESEGSAEDRA
EWGVVLDQLARYRPREGINGLVLAIDVRRLQQPDRDSLAEEGRALRERIEQLIRLFDKRF
PIYVLVTQCDHIYGWEEWSGRLEPGALDHAMGYLVPHSESGFVDRAFNRIGQRLGLLRLQ
LAARAPGATPALLMFPSELENIKAGLRLFLDACFSDHPYFESPFLRGLFFSSGAQEGGAV
STLLPDLPPVPAHRASHVGLFLHDFFGRILPTDRNASLPAALVNRWRRATRHMGLLAWLA
LCLAAALLMAAAFEHNRETIALVRDTYPLDAKFVGNLDEDARTLERISESLSVVEKRNDR
WVAEWMVATSEVGELETRLQRSYVSNFQKYVERGSYAAFQEPGPKSTLPVQALRAGRIHN
LVRYIHHIQRRMAGDSQAQLTELPGLLPADPANGVKADTVRRLARLEVSYIAWHPADDGF
LDSHLASSQALLSQQAYASQPPFSWVRDLPADALLGEDVTLASFWQPLSRAGAGPMDAKL
APELAEVRVPVAFTAAGQRAIDDFLDSMAESVKDRPKFERAREQFNAWYKLQRANAWYQF
AARFPAGEQLIAGEDAWRATLVRVANGQDPYAMLADRLRREFEALPDDELPQWLLLARTL
SRLQGEARIGGLVAGSQAASLFSSINAVGGRALQQVSTSLPQGRDTLRRDLALRQQLRQY
NVSLDAVMREALDGAGKALPLAADFHAYGIDAAVQSSKLRVAADAMSELKQGSGFDTPES
GVVWKLASGPLHLLLSYVEQQASCALQKDWETGVMWPLQSATSMTQIMDQLFGAQGTVWA
FADGAAKPFLHRNATRFSMVETRGYTLPVTPAFLPMLNGAVNKRVEQMVSQQQLEVAQRK
RAADGEKRQLESSQALQAIDARLAEAKQKADALRVAPLQLTITAQPTGVNPEATVKPYLT
TLTLKCAAAAKVINNFNFPVTEQLAWSPAQCGEASLEIKIGDLTLVRRYPGATGVADFVN
DFRDGTHDFGAADFPQSRARLDTLKVAKISVRYDLQGQDALLDAQAQIAKLARDQQEMGA
ERQRLTARQLSEAQALVDIRAPGAQGEPLLQVSVPPRIGGCWSAESRSKSPQTLQAMFDA
LVKPAASP