Protein Info for ABID97_RS12575 in Variovorax sp. OAS795

Annotation: ATP-grasp domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF02655: ATP-grasp_3" amino acids 121 to 269 (149 residues), 62.8 bits, see alignment E=2.1e-21

Best Hits

KEGG orthology group: None (inferred from 82% identity to vap:Vapar_3083)

Predicted SEED Role

"FIG00858241: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (382 amino acids)

>ABID97_RS12575 ATP-grasp domain-containing protein (Variovorax sp. OAS795)
MPTIAVAAISARAMAQAAASDGFGVVALDLFGDADTRRAASRWLPIGAPGSLQIDGASVM
AALRSLAQEGANGEPVLGWIAGSGFEGEPDLLEEGAAALPLIGTAPAGVRRLRDPAAFFG
FLAAHVIPCPQVLLHAPEDPAGWLMKDAHGCGGWHVRQAPWEMDEPPSPHHYFQREMPGL
PMSATFIANGRDVHVLGFNLQSVRRFGARPYVFCGAVGPVPLADEFASRLTDIARALTVE
FGLRGLCSLDFMRDGDTLGVLEVNPRPPASMSLYRRPRGTPGVMQAHLRACLHGELPSTP
LPAQDPEGIEIVFARQPIELDAAAADRLAAWPGLRDLPTAGQRFDTGDPVCTLTASGASA
QQVRARLDDGRERLLQSLETHA