Protein Info for ABID97_RS12150 in Variovorax sp. OAS795

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 transmembrane" amino acids 17 to 39 (23 residues), see Phobius details amino acids 80 to 107 (28 residues), see Phobius details amino acids 113 to 134 (22 residues), see Phobius details amino acids 153 to 174 (22 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details PF05552: MS_channel_1st_1" amino acids 9 to 57 (49 residues), 51.4 bits, see alignment 4e-18 amino acids 106 to 149 (44 residues), 31.4 bits, see alignment 7.3e-12

Best Hits

KEGG orthology group: None (inferred from 94% identity to vap:Vapar_1981)

Predicted SEED Role

"Small-conductance mechanosensitive channel"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (251 amino acids)

>ABID97_RS12150 hypothetical protein (Variovorax sp. OAS795)
MDRFGIHLEPLNAMLYQVGAFVPRLAIALVVVLAGWLIAKTVRFAVTKALRAINFNVLTE
RAGLDNFLRQGGWPGDTSSLFGVIAYWLVILAALLVAFNGLGLSYIADLLGRVVWFVPNL
FVALLVIAFGSYFARFVGEAVSSYFRGAQLRDAVLLGQVARYAVMAFVILIALDQVKIGG
DIVRESFLVVLAGVVFALALAFGLAGKDWAAAQIERWWPRLPKDNIPPRDAIPPRDSLPP
RPSPHDQRPPR