Protein Info for ABID97_RS11920 in Variovorax sp. OAS795

Annotation: DUF1003 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 transmembrane" amino acids 58 to 79 (22 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details PF06210: DUF1003" amino acids 54 to 150 (97 residues), 96.6 bits, see alignment E=4.3e-32

Best Hits

KEGG orthology group: None (inferred from 79% identity to vpe:Varpa_3063)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (182 amino acids)

>ABID97_RS11920 DUF1003 domain-containing protein (Variovorax sp. OAS795)
MAAADPARPGHGEEQPVAGVIDRNIAALVRRREQQRISTGLQDRIADAITHFAGSMKFVY
LHLLIYGGWIVINLGWVPMVRAFDPTFVVLAMVASVEAIFISTFVMISQNRMAALADQRA
DLDLQISLLGEHEITKIVTLVAEIAKRMDIPAAHDPELDELSKNVSPERVLDRIERPPGE
TR