Protein Info for ABID97_RS11670 in Variovorax sp. OAS795

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 transmembrane" amino acids 40 to 59 (20 residues), see Phobius details amino acids 101 to 126 (26 residues), see Phobius details amino acids 138 to 156 (19 residues), see Phobius details amino acids 162 to 180 (19 residues), see Phobius details amino acids 223 to 244 (22 residues), see Phobius details amino acids 265 to 287 (23 residues), see Phobius details PF12911: OppC_N" amino acids 28 to 75 (48 residues), 31.4 bits, see alignment 1.4e-11 PF00528: BPD_transp_1" amino acids 116 to 297 (182 residues), 99.5 bits, see alignment E=2e-32

Best Hits

Swiss-Prot: 38% identical to DPPC_BACPE: Dipeptide transport system permease protein DppC (dppC) from Bacillus pseudofirmus (strain OF4)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 69% identity to ara:Arad_8265)

MetaCyc: 34% identical to dipeptide ABC transporter membrane subunit DppC (Escherichia coli K-12 substr. MG1655)
ABC-8-RXN [EC: 7.4.2.9]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>ABID97_RS11670 ABC transporter permease (Variovorax sp. OAS795)
MSDIATPLQSEKPSVASSSAGKLGSNHFFARLMRSPQGKLGMLIIGLVMVMVLFGPYLAP
HSPDDMAPLSRYKGPSAANWLGTDQYGRDLLSRILYGARATVVLAFMATAIGSLIGAFIG
TLCAFLGGRFDEIVMRTIDAVMAIPSLLFALLIVNLMGKGEINAVLAIAIAFVPSMTRIT
RSVALAIRKQDFVSAAIARGESSLYVVLREMLPNVVAPVVVEMTIRVAFAVMLFATLSFL
GLGAQPPASEWGLMAAEARKFMHLSPWMILWPSAAVAMVAIGFNLLGDGLRDALNPKT