Protein Info for ABID97_RS11290 in Variovorax sp. OAS795

Annotation: DNA repair protein RadC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 176 TIGR00608: DNA repair protein RadC" amino acids 11 to 176 (166 residues), 134.5 bits, see alignment E=2.4e-43 PF04002: RadC" amino acids 56 to 175 (120 residues), 126.8 bits, see alignment E=2.4e-41

Best Hits

KEGG orthology group: K03630, DNA repair protein RadC (inferred from 67% identity to pna:Pnap_4157)

Predicted SEED Role

"DNA repair protein RadC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (176 amino acids)

>ABID97_RS11290 DNA repair protein RadC (Variovorax sp. OAS795)
MSHDLFSSLDSFVSVSSSSLLVRDVAGAYRPAEADEVLAAAQRVLASRVRGANVLTSPAV
VKDFLRARLGALPHEIFAVVHLDTQHVVLDYVEMFRGTVTQTSVYPREVVKDALALNSSA
LLLVHCHPSGCAQVSLADEHLTRTLRQAAALVDVRVLDHLIVAGSMVLSMAERGLL