Protein Info for ABID97_RS11205 in Variovorax sp. OAS795

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 33 to 52 (20 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 112 to 130 (19 residues), see Phobius details amino acids 166 to 185 (20 residues), see Phobius details amino acids 216 to 236 (21 residues), see Phobius details amino acids 255 to 277 (23 residues), see Phobius details amino acids 292 to 311 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 32 to 306 (275 residues), 152.3 bits, see alignment E=7.7e-49

Best Hits

KEGG orthology group: None (inferred from 68% identity to xau:Xaut_0006)

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (344 amino acids)

>ABID97_RS11205 branched-chain amino acid ABC transporter permease (Variovorax sp. OAS795)
MSTSRRSITAVLGLPLLAIALVLPFFVQEAYLLHSLTMILYFAYMASAWNFVCGYVGQLS
LGHAVFAGLAGYATVLLYTQLGWSPWFGMLAGGLLAAILAVILGYPNFKLRGPYFTLTTI
AFAEIVRIWLENTDEFMGIPLKGAQGLVVPPSDLGWQVFQFDGKVPYYYIALAMLVIMLL
ATIVLERSRLGYYLKAVRGDPNGAAALGVNGTRCSLTALAISAFMTGLGGAFYAQFFRYI
NPERNLGMEFSIDTALMAIVGGQGTVLGPVLGALLLHPIAEITRAWFGGRFPGLHLVIYG
AILMVAVLYFPKGVIAPLQHWLTRRGLRKAAPAPAIGDVQEVRS