Protein Info for ABID97_RS11200 in Variovorax sp. OAS795

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 PF00005: ABC_tran" amino acids 25 to 168 (144 residues), 86.5 bits, see alignment E=2.8e-28 PF12399: BCA_ABC_TP_C" amino acids 219 to 243 (25 residues), 34.7 bits, see alignment (E = 1e-12)

Best Hits

Swiss-Prot: 32% identical to LPTB_HAEIN: Lipopolysaccharide export system ATP-binding protein LptB (lptB) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 69% identity to xau:Xaut_0007)

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (248 amino acids)

>ABID97_RS11200 ABC transporter ATP-binding protein (Variovorax sp. OAS795)
MSTLGNAMLEVQGLQKRFGGVHAVRDVSFSLRQGEILGLLGPNGAGKTTAFNLIAGFHPL
DEGQVRFEGRNIAGMNPNQICHAGIARTFQISRPFGGLTALENVMVGAFARHPTRSKARA
EAERMLDFLGMSSRADHDAGDLTAFDKRKLELGRALATGPRLLLMDEVVAGATPSEAGEM
VRLVHKVREQGISVLIVEHVMKVIMGLSDRVIVMDQGTLIANGKPADVVNDPRVLTAYFG
EGYAGNDI