Protein Info for ABID97_RS11020 in Variovorax sp. OAS795

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 21 to 45 (25 residues), see Phobius details amino acids 57 to 79 (23 residues), see Phobius details amino acids 86 to 103 (18 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details amino acids 146 to 169 (24 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 228 to 250 (23 residues), see Phobius details amino acids 261 to 286 (26 residues), see Phobius details amino acids 296 to 314 (19 residues), see Phobius details amino acids 320 to 341 (22 residues), see Phobius details amino acids 355 to 375 (21 residues), see Phobius details amino acids 381 to 403 (23 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 371 (346 residues), 146 bits, see alignment E=7.1e-47 amino acids 249 to 402 (154 residues), 43.8 bits, see alignment E=8.7e-16

Best Hits

KEGG orthology group: None (inferred from 95% identity to vap:Vapar_1850)

Predicted SEED Role

"Fosmidomycin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>ABID97_RS11020 MFS transporter (Variovorax sp. OAS795)
MSSSPSSTAASPTNLRGDAQLIGLVGLAHAISHFSQLILAPLFPWLKDAFNVSYTELGAV
LTVFFVVSCVVQAASGFIVDKLGPRPVLFVGLGALALAAFGYALAQSYWMLLLCAVVGGV
GNGVFHPVDYTLFNRKVAPTRLGHAYSVHGITGSLGWALAPAFVVPIAIAFSWRVALASA
GVLAIVVLLVLWAYRSVLALDVKTVQKATGHGEPAPIGGEFDFLRIPAVWMCFGFFFFYA
VVISVVQTFAPVAAGHLHAVPVALVAVCLTVYMVASAAGMVVGGFLASDPSRCERIVGMG
FGVAAVLALVLAFAQFPPVMVPVLFGAMGFVSGVAGPSRDLLVKRSTPPNATGRVYGVVY
AGLDIGQALAPLVFGRLMDHAQYTSVIVGLALVQAVLIASAFNVTRVRRTALVTASA