Protein Info for ABID97_RS10385 in Variovorax sp. OAS795

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 61 to 85 (25 residues), see Phobius details amino acids 92 to 118 (27 residues), see Phobius details amino acids 121 to 138 (18 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 223 to 249 (27 residues), see Phobius details amino acids 261 to 284 (24 residues), see Phobius details amino acids 291 to 312 (22 residues), see Phobius details amino acids 318 to 343 (26 residues), see Phobius details amino acids 355 to 375 (21 residues), see Phobius details amino acids 381 to 402 (22 residues), see Phobius details PF07690: MFS_1" amino acids 33 to 345 (313 residues), 97.9 bits, see alignment E=2.9e-32

Best Hits

KEGG orthology group: None (inferred from 81% identity to vap:Vapar_1733)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>ABID97_RS10385 MFS transporter (Variovorax sp. OAS795)
MQKQFEMAGAPSSAPSLPPSSTHWCGVALVVAAGVAASLQVGKVAIAVPQLRADFGLDLS
MVGWLMAMFSLLGVIGAVPVGAWVARAGDRRLLVAGLLAIAMGSAAGAIANGVAVLLASR
IVEGLGFVLITIAGPSVLRRMVAPGGKDLAFAIWSCFMPAGIAMALFSGSLLEEWRGFWL
GNAALSAVLAMLLAMGVPRGPLGREALVSWRGMARDAAATLKAGAPALISASFVVYSLQF
FALFSFLPVLLIERMGVGTAMAGSLSAVACCVNVAGNLVAGVLLGRGAPRWLLAASASAL
MGLAALGIFLPVLGAVPAFALCLAFSGAGGLLPATLIGTSALVAPSERLAPMSMGLLMLG
SNLGQMIGPVVVGGAVDAAGWPAAAAIVAVAGVCGVLLALGLRRSLARRVR