Protein Info for ABID97_RS09765 in Variovorax sp. OAS795

Annotation: DUF2163 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 32 to 50 (19 residues), see Phobius details PF09931: Phage_phiJL001_Gp84_N" amino acids 8 to 158 (151 residues), 143.1 bits, see alignment E=8.5e-46 TIGR02218: phage conserved hypothetical protein BR0599" amino acids 24 to 280 (257 residues), 164.8 bits, see alignment E=1.6e-52 PF09356: Phage_BR0599" amino acids 200 to 278 (79 residues), 71.2 bits, see alignment E=7.7e-24

Best Hits

KEGG orthology group: None (inferred from 70% identity to vap:Vapar_2487)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>ABID97_RS09765 DUF2163 domain-containing protein (Variovorax sp. OAS795)
MTKTISVPFKAHLAQGTTTLAWCWKATRRDGYVLAVTTCASSLLFEGVLYRPRYGFNPKA
MSQEASGAVSNTEVETVLSDEITEEDIFAGLWDGCVVETFQVNYRDFSMGKINFGVKTMG
DLKAGRSALNAELRGLTQSLQKVVGRVYTAGCPWVFGSIGSAYVPACNVDLGPLTATGTL
TSATDLRTFADSSRGEAADYFGAGLLTFTSGPNEGVQMEIYSFAAGVFVLHLPMPYTVSV
GDTYSVTPGCRKRFTEDCRTKWANTNNFGGFPQVPGSDKVLGLGGTEGTNL