Protein Info for ABID97_RS09380 in Variovorax sp. OAS795

Annotation: substrate-binding domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF12849: PBP_like_2" amino acids 27 to 261 (235 residues), 173.1 bits, see alignment E=1.5e-54 PF13531: SBP_bac_11" amino acids 41 to 270 (230 residues), 58.5 bits, see alignment E=1.3e-19

Best Hits

KEGG orthology group: K05772, putative tungstate transport system substrate-binding protein (inferred from 89% identity to vap:Vapar_1590)

Predicted SEED Role

"ABC-type tungstate transport system, periplasmic binding protein" in subsystem ABC transporter tungstate (TC 3.A.1.6.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (285 amino acids)

>ABID97_RS09380 substrate-binding domain-containing protein (Variovorax sp. OAS795)
MNLSFKHRGTAGIRTSLAVAAFFLSAGAASAETITMASTTSTEQSGLFSHLLPAFRKASG
IDVKVVAVGTGQAIDMAKRGDADVLFVHDTAAEEKFVAEGFSARRYPVMYNDFVLVGPKA
DPAGTQGKDIAAALKKIATANAPFVSRGDKSGTDAAERRLWTQAGVADAGQPVPNDRKGT
GYRECGCGMGPALNIAASSGAYVLADRGTWLSFKNRAGLAVLVEGDRRLFNQYGVMVVSP
EKFPSLDSKGAQKFVDWVISPAGQQTIASYTIGGEQLFFPNAQAN