Protein Info for ABID97_RS09300 in Variovorax sp. OAS795

Annotation: TRAP transporter small permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 179 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details transmembrane" amino acids 53 to 70 (18 residues), see Phobius details amino acids 91 to 114 (24 residues), see Phobius details amino acids 134 to 153 (20 residues), see Phobius details PF04290: DctQ" amino acids 31 to 161 (131 residues), 73.4 bits, see alignment E=8.2e-25

Best Hits

KEGG orthology group: None (inferred from 79% identity to pol:Bpro_1753)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (179 amino acids)

>ABID97_RS09300 TRAP transporter small permease subunit (Variovorax sp. OAS795)
MSALLKFSFWMDWISSQLGKVAAFTVLAAALISAGNAFVRFGLNTSSNAWLEIQWYLFAA
TVMLGAPVVLKLNEHVRVDIIYGKLKGHGPVYVDLFGLLCFLLPVMGIIAWLSWPLFYSM
LLSGEMSNNSGGLIRWPAMLLLPLGFALMFLQGVSEVIKRIAYLMGVIEMDTHYEKPVQ