Protein Info for ABID97_RS09155 in Variovorax sp. OAS795

Annotation: DUF2339 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1251 transmembrane" amino acids 6 to 33 (28 residues), see Phobius details amino acids 196 to 220 (25 residues), see Phobius details amino acids 232 to 251 (20 residues), see Phobius details amino acids 258 to 277 (20 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details amino acids 311 to 329 (19 residues), see Phobius details amino acids 335 to 354 (20 residues), see Phobius details amino acids 359 to 379 (21 residues), see Phobius details amino acids 387 to 407 (21 residues), see Phobius details amino acids 438 to 455 (18 residues), see Phobius details amino acids 461 to 482 (22 residues), see Phobius details amino acids 489 to 508 (20 residues), see Phobius details amino acids 514 to 531 (18 residues), see Phobius details amino acids 538 to 556 (19 residues), see Phobius details amino acids 568 to 590 (23 residues), see Phobius details amino acids 602 to 622 (21 residues), see Phobius details amino acids 628 to 646 (19 residues), see Phobius details amino acids 653 to 673 (21 residues), see Phobius details amino acids 688 to 711 (24 residues), see Phobius details amino acids 725 to 745 (21 residues), see Phobius details amino acids 751 to 770 (20 residues), see Phobius details amino acids 777 to 800 (24 residues), see Phobius details amino acids 812 to 831 (20 residues), see Phobius details amino acids 852 to 875 (24 residues), see Phobius details amino acids 895 to 913 (19 residues), see Phobius details amino acids 924 to 942 (19 residues), see Phobius details amino acids 947 to 969 (23 residues), see Phobius details amino acids 977 to 997 (21 residues), see Phobius details amino acids 1014 to 1032 (19 residues), see Phobius details amino acids 1048 to 1067 (20 residues), see Phobius details amino acids 1087 to 1106 (20 residues), see Phobius details amino acids 1118 to 1136 (19 residues), see Phobius details amino acids 1156 to 1177 (22 residues), see Phobius details amino acids 1184 to 1203 (20 residues), see Phobius details amino acids 1211 to 1232 (22 residues), see Phobius details PF10101: DUF2339" amino acids 199 to 746 (548 residues), 306.8 bits, see alignment E=2e-95 amino acids 697 to 1234 (538 residues), 141.2 bits, see alignment E=2.6e-45

Best Hits

KEGG orthology group: None (inferred from 84% identity to vap:Vapar_1537)

Predicted SEED Role

"FIG01199237: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1251 amino acids)

>ABID97_RS09155 DUF2339 domain-containing protein (Variovorax sp. OAS795)
MWFLGMIAGLFIGALAESLPAALILAVVGAFALPRIVGKKNRAGPARTEAESAAPPSTGT
PAGGMLALQHRVAELEQRVRLLEQRTGQGAAGPAMEPLPSRAPEPAGADLHVAQPVPIPV
PVPMPVPRPAAQAAAGVAAVHVPVPAAIGATRTVPEPAAPVAAKPPAPVPPPPRPAPPPP
PAVPLRERLPAPIANLIFGGNMLVKLGVLILFLGLAFLLRYTAERVTVPIELRYAAVALV
GAGLLALGWFLRRKRTGYALILQGAGIGVFYLTTLAAMKVHELLPPTAGFVFLFGVAALS
AVLAVLQNAPMLAIVAVLEGFAAPVLASTGQNRPVGLFTYLLVLDVGIVLIAWFKAWRVL
NLIGFVGTFTLAAGWAHKYYTDDQYGIVQPFLLVFFLMFVAIGLLFARRTLFDAPVQPAQ
PLAARALDTLRRAGRVDSSLVFGTPMVAFGMQVLLMQPREYGATFSAMALAAFYLVLGRL
VFATQPKGLALLAEAYAIVGVIFGTLAIPLGLEGRWTGAAWAVEAAGMYWLGARQARVYA
RAFSFLVFAGAVWKLLEATQLDAAAGHPLLQGSVIGPLLVTVSAFAMWTIHRRAKLDEGG
WEALVGTALPWLGMGALTLLLWQWLTPPWAAAATAVLASATFAFAVRFKLRLLAFVTYGM
QALAVAGFIATLHRVAEGTDGGQVLASGWQGAVAASLIALSVLGSAGWSMLQAHRAALAR
GIQPAWSAGNAVAVIAGVSLLHLAMLFQVSLAQAALLWPLTATVVLWVALRLAHRPLAAL
AGVLQVISALLHAFSQVWIYSGNTPPPAFAHLGFWTPVVLGLAALLAGAWMSGEAGRHAT
EGTTAGKRTRWINGWCANAAVLWLPVIWGLAWWLFGWLDESSEVLRRNGLAGHRAAAAMA
IVLVTSVLSAVAAHRRGWPQLGRATLATLPGVVLIAAYGAALAAPGIYVPSSALGWIAWP
LALLWHLRLLHAQKRWLAPSALAPLHVAGFWFFVLLAARECQWQLGSVGAEWSSWQLLGW
AIVPALALWMLRSRALQLRWPLTEYRTAYLEVAAMPVAAYLLAWVWITNAASPGNASPLP
YVPLLNPLELAEWLVLFALVLWWRALPETSFARVQPMVAKGVLGLTGLALLTGMVLRSCH
HYAGVDWRFDALYASWLTQAALSITWAVCGVVAMVLGHARGVRTLWVGGAALLGVVVLKL
FFVELADRGGLFRIVSFIAVGALLLLVGYFAPVPPSRKEAEKDVLPEGGVA